SNMFSMMA: using symmetric nonnegative matrix factorization and Kronecker regularized least squares to predict potential small molecule-microRNA association
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Title
SNMFSMMA: using symmetric nonnegative matrix factorization and Kronecker regularized least squares to predict potential small molecule-microRNA association
Authors
Keywords
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Journal
RNA Biology
Volume -, Issue -, Pages 1-11
Publisher
Informa UK Limited
Online
2019-11-19
DOI
10.1080/15476286.2019.1694732
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Note: Only part of the references are listed.- Systematical Identification of Breast Cancer-Related Circular RNA Modules for Deciphering circRNA Functions Based on the Non-Negative Matrix Factorization Algorithm
- (2019) Shuyuan Wang et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- Prediction of small molecule-microRNA associations by sparse learning and heterogeneous graph inference
- (2019) Jun Yin et al. MOLECULAR PHARMACEUTICS
- Ensemble of decision tree reveals potential miRNA-disease associations
- (2019) Xing Chen et al. PLoS Computational Biology
- BNPMDA: Bipartite Network Projection for MiRNA–Disease Association prediction
- (2018) Xing Chen et al. BIOINFORMATICS
- Targeting RNA in mammalian systems with small molecules
- (2018) Anita Donlic et al. Wiley Interdisciplinary Reviews-RNA
- OUP accepted manuscript
- (2018) BRIEFINGS IN BIOINFORMATICS
- MDHGI: Matrix Decomposition and Heterogeneous Graph Inference for miRNA-disease association prediction
- (2018) Xing Chen et al. PLoS Computational Biology
- A Novel Computational Method for the Identification of Potential miRNA-Disease Association Based on Symmetric Non-negative Matrix Factorization and Kronecker Regularized Least Square
- (2018) Yan Zhao et al. Frontiers in Genetics
- 4-Acetyl-Antroquinonol B Suppresses SOD2-Enhanced Cancer Stem Cell-Like Phenotypes and Chemoresistance of Colorectal Cancer Cells by inducing hsa-miR-324 re-Expression
- (2018) Oluwaseun Adebayo Bamodu et al. Cancers
- Prediction of Potential Small Molecule-Associated MicroRNAs Using Graphlet Interaction
- (2018) Na-Na Guan et al. Frontiers in Pharmacology
- Curcumin sensitizes prostate cancer cells to radiation partly via epigenetic activation of miR-143 and miR-143 mediated autophagy inhibition
- (2017) Jianbo Liu et al. JOURNAL OF DRUG TARGETING
- NRDTD: a database for clinically or experimentally supported non-coding RNAs and drug targets associations
- (2017) Xing Chen et al. Database-The Journal of Biological Databases and Curation
- LRSSLMDA: Laplacian Regularized Sparse Subspace Learning for MiRNA-Disease Association prediction
- (2017) Xing Chen et al. PLoS Computational Biology
- Inforna 2.0: A Platform for the Sequence-Based Design of Small Molecules Targeting Structured RNAs
- (2016) Matthew D. Disney et al. ACS Chemical Biology
- Small-molecule approaches toward the targeting of oncogenic miRNAs: roadmap for the discovery of RNA modulators
- (2016) Audrey Di Giorgio et al. Future Medicinal Chemistry
- Transcriptional gene silencing of dopamine D3 receptor caused by let-7d mimics in immortalized renal proximal tubule cells of rats
- (2016) Ye Zhang et al. GENE
- Non-coding RNAs as drug targets
- (2016) Masayuki Matsui et al. NATURE REVIEWS DRUG DISCOVERY
- MicroRNA-874 inhibits growth, induces apoptosis and reverses chemoresistance in colorectal cancer by targeting X-linked inhibitor of apoptosis protein
- (2016) JINFENG HAN et al. ONCOLOGY REPORTS
- Identifying novel associations between small molecules and miRNAs based on integrated molecular networks
- (2015) Yingli Lv et al. BIOINFORMATICS
- Tumor tissue microRNA expression in association with triple-negative breast cancer outcomes
- (2015) Yan Liu et al. BREAST CANCER RESEARCH AND TREATMENT
- Thinking big with small molecules
- (2015) Karen Mruk et al. JOURNAL OF CELL BIOLOGY
- The Clinical Relevance of the miR-197/CKS1B/STAT3-mediated PD-L1 Network in Chemoresistant Non-small-cell Lung Cancer
- (2015) Yu Fujita et al. MOLECULAR THERAPY
- Methylation-mediated repression of potential tumor suppressor miR-203a and miR-203b contributes to esophageal squamous cell carcinoma development
- (2015) Yibing Liu et al. TUMOR BIOLOGY
- A let-7b binding site SNP in the 3′-UTR of the Bcl-xL gene enhances resistance to 5-fluorouracil and doxorubicin in breast cancer cells
- (2015) TING WANG et al. Oncology Letters
- Toward more realistic drug-target interaction predictions
- (2014) T. Pahikkala et al. BRIEFINGS IN BIOINFORMATICS
- Extracellular Disposal of Tumor-Suppressor miRs-145 and -34a via Microvesicles and 5-FU Resistance of Human Colon Cancer Cells
- (2014) Yukihiro Akao et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- Targeting the Production of Oncogenic MicroRNAs with Multimodal Synthetic Small Molecules
- (2013) Duc Duy Vo et al. ACS Chemical Biology
- Prediction of drug target groups based on chemical–chemical similarities and chemical–chemical/protein connections
- (2013) Lei Chen et al. BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS
- Constructing and characterizing a bioactive small molecule and microRNA association network for Alzheimer's disease
- (2013) F. Meng et al. Journal of the Royal Society Interface
- SM2miR: a database of the experimentally validated small molecules' effects on microRNA expression
- (2012) X. Liu et al. BIOINFORMATICS
- Drug target prediction using adverse event report systems: a pharmacogenomic approach
- (2012) M. Takarabe et al. BIOINFORMATICS
- Prediction of Disease-Related Interactions between MicroRNAs and Environmental Factors Based on a Semi-Supervised Classifier
- (2012) Xing Chen et al. PLoS One
- Identification of links between small molecules and miRNAs in human cancers based on transcriptional responses
- (2012) Wei Jiang et al. Scientific Reports
- Symmetric Nonnegative Matrix Factorization: Algorithms and Applications to Probabilistic Clustering
- (2011) Zhaoshui He et al. IEEE TRANSACTIONS ON NEURAL NETWORKS
- A novel method to quantify gene set functional association based on gene ontology
- (2011) S. Lv et al. Journal of the Royal Society Interface
- PREDICT: a method for inferring novel drug indications with application to personalized medicine
- (2011) A. Gottlieb et al. Molecular Systems Biology
- DrugBank 3.0: a comprehensive resource for 'Omics' research on drugs
- (2010) C. Knox et al. NUCLEIC ACIDS RESEARCH
- MicroRNAs and their implications in toxicological research
- (2010) Carolina Lema et al. TOXICOLOGY LETTERS
- PhenomiR: a knowledgebase for microRNA expression in diseases and biological processes
- (2010) Andreas Ruepp et al. GENOME BIOLOGY
- MicroRNAs: Target Recognition and Regulatory Functions
- (2009) David P. Bartel CELL
- Differential expression profiling of microRNAs and their potential involvement in renal cell carcinoma pathogenesis
- (2009) Tsz-fung F. Chow et al. CLINICAL BIOCHEMISTRY
- MicroRNA-143 reduces viability and increases sensitivity to 5-fluorouracil in HCT116 human colorectal cancer cells
- (2009) Pedro M. Borralho et al. FEBS Journal
- PubChem: a public information system for analyzing bioactivities of small molecules
- (2009) Y. Wang et al. NUCLEIC ACIDS RESEARCH
- Small-Molecule Inhibitors of MicroRNA miR-21 Function
- (2008) Kiranmai Gumireddy et al. ANGEWANDTE CHEMIE-INTERNATIONAL EDITION
- The noncoding RNA, miR-126, suppresses the growth of neoplastic cells by targeting phosphatidylinositol 3-kinase signaling and is frequently lost in colon cancers
- (2008) Chunguang Guo et al. GENES CHROMOSOMES & CANCER
- miR2Disease: a manually curated database for microRNA deregulation in human disease
- (2008) Q. Jiang et al. NUCLEIC ACIDS RESEARCH
- An Analysis of Human MicroRNA and Disease Associations
- (2008) Ming Lu et al. PLoS One
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