Monitoring within-farm transmission dynamics of antimicrobial-resistant Campylobacter in dairy cattle using broth microdilution and long-read whole genome sequencing

Within-farm dynamics of ESBL-producing Escherichia coli in dairy cattle: Resistance profiles and molecular characterization by long-read whole-genome sequencing

(2022) Maitane Tello et al.   Frontiers in Microbiology

Genome-wide insights into population structure and host specificity of Campylobacter jejuni

(2021) Lennard Epping et al.   Scientific Reports

Whole genome-based characterisation of antimicrobial resistance and genetic diversity in Campylobacter jejuni and Campylobacter coli from ruminants

(2021) Medelin Ocejo et al.   Scientific Reports

Natural Horizontal Gene Transfer of Antimicrobial Resistance Genes in Campylobacter spp. From Turkeys and Swine

(2021) Vanina Guernier-Cambert et al.   Frontiers in Microbiology

ResFinder 4.0 for predictions of phenotypes from genotypes

(2020) Valeria Bortolaia et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

The ARRIVE guidelines 2.0: Updated guidelines for reporting animal research*

(2020) Nathalie Percie du Sert et al.   JOURNAL OF CEREBRAL BLOOD FLOW AND METABOLISM

Occurrence of Campylobacter jejuni and Campylobacter coli in Cattle and Sheep in Northern Spain and Changes in Antimicrobial Resistance in Two Studies 10-years Apart

(2019) Medelin Ocejo et al.   Pathogens

Acquisition of fluoroquinolone resistance leads to increased biofilm formation and pathogenicity in Campylobacter jejuni

(2019) Matthew V. X. Whelan et al.   Scientific Reports

Use of whole-genome sequencing for Campylobacter surveillance from NARMS retail poultry in the United States in 2015

(2018) Chris A. Whitehouse et al.   FOOD MICROBIOLOGY

Excretion patterns of Campylobacter jejuni by dairy cows

(2018) Delphine Rapp et al.   NEW ZEALAND JOURNAL OF AGRICULTURAL RESEARCH

PlasFlow: predicting plasmid sequences in metagenomic data using genome signatures

(2018) Pawel S Krawczyk et al.   NUCLEIC ACIDS RESEARCH

Phylogenetic Relatedness Among Plasmids Harbored by Campylobacter jejuni and Campylobacter coli Isolated From Retail Meats

(2018) Daya Marasini et al.   Frontiers in Microbiology

Rapid multi-locus sequence typing direct from uncorrected long reads using Krocus

(2018) Andrew J. Page et al.   PeerJ

PointFinder: a novel web tool for WGS-based detection of antimicrobial resistance associated with chromosomal point mutations in bacterial pathogens

(2017) Ea Zankari et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads

(2017) Ryan R. Wick et al.   PLoS Computational Biology

Emergence of Multidrug-Resistant Campylobacter Species Isolates with a Horizontally Acquired rRNA Methylase

(2014) Yang Wang et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

A single nucleotide in the promoter region modulates the expression of the  -lactamase OXA-61 in Campylobacter jejuni

(2014) X. Zeng et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Cryptic ecology among host generalistCampylobacter jejuniin domestic animals

(2014) Samuel K. Sheppard et al.   MOLECULAR ECOLOGY

Elucidating the Aetiology of Human Campylobacter coli Infections

(2013) Francois Roux et al.   PLoS One

Identification of acquired antimicrobial resistance genes

(2012) E. Zankari et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Natural Transformation of Campylobacter jejuni Occurs Beyond Limits of Growth

(2012) Christina S. Vegge et al.   PLoS One

A Fluoroquinolone Resistance Associated Mutation in gyrA Affects DNA Supercoiling in Campylobacter jejuni

(2012) Jing Han et al.   Frontiers in Cellular and Infection Microbiology

A Gene-By-Gene Approach to Bacterial Population Genomics: Whole Genome MLST of Campylobacter

(2012) Samuel K. Sheppard et al.   Genes

Impaired Fitness and Transmission of Macrolide-Resistant Campylobacter jejuni in Its Natural Host

(2011) Taradon Luangtongkum et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

BIGSdb: Scalable analysis of bacterial genome variation at the population level

(2011) Keith A Jolley et al.   BMC BIOINFORMATICS

Molecular epidemiology and genetic diversity of Campylobacter jejuni in ruminants

(2010) D. H. GROVE-WHITE et al.   EPIDEMIOLOGY AND INFECTION

progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement

(2010) Aaron E. Darling et al.   PLoS One

Correlation between Genotypic Diversity, Lipooligosaccharide Gene Locus Class Variation, and Caco-2 Cell Invasion Potential of Campylobacter jejuni Isolates from Chicken Meat and Humans: Contribution to Virulotyping

(2009) I. Habib et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY