Metabarcoding of Hepatitis E Virus Genotype 3 and Norovirus GII from Wastewater Samples in England Using Nanopore Sequencing

Search and sequence analysis tools services from EMBL-EBI in 2022

(2022) Fábio Madeira et al.   NUCLEIC ACIDS RESEARCH

Hepatitis E virus genotype 3 microbiological surveillance by the Spanish Reference Laboratory: geographic distribution and phylogenetic analysis of subtypes from 2009 to 2019

(2022) Milagros Muñoz-Chimeno et al.   Eurosurveillance

Long-term monitoring of SARS-CoV-2 RNA in wastewater of the Frankfurt metropolitan area in Southern Germany

(2021) Shelesh Agrawal et al.   Scientific Reports

Twelve years of SAMtools and BCFtools

(2021) Petr Danecek et al.   GigaScience

Hepatitis E Outbreak in the Central Part of Italy Sustained by Multiple HEV Genotype 3 Strains, June–December 2019

(2021) Anna Garbuglia et al.   Viruses-Basel

High-throughput sequencing of SARS-CoV-2 in wastewater provides insights into circulating variants

(2021) Rafaela S. Fontenele et al.   WATER RESEARCH

Clinical Manifestations, Pathogenesis and Treatment of Hepatitis E Virus Infections

(2020) Sébastien Lhomme et al.   Journal of Clinical Medicine

Update: proposed reference sequences for subtypes of hepatitis E virus (species Orthohepevirus A)

(2020) Donald B. Smith et al.   JOURNAL OF GENERAL VIROLOGY

Presence of SARS-Coronavirus-2 RNA in Sewage and Correlation with Reported COVID-19 Prevalence in the Early Stage of the Epidemic in The Netherlands

(2020) Gertjan Medema et al.   Environmental Science & Technology Letters

Hepatitis E virus genome detection in commercial pork livers and pork meat products in Germany

(2020) Srinivas Reddy Pallerla et al.   JOURNAL OF VIRAL HEPATITIS

Tracking SARS-CoV-2 in Sewage: Evidence of Changes in Virus Variant Predominance during COVID-19 Pandemic

(2020) Javier Martin et al.   Viruses-Basel

Outbreaks of Norovirus and Acute Gastroenteritis Associated with British Columbia Oysters, 2016–2017

(2019) Kashmeera Meghnath et al.   Food and Environmental Virology

Epidemiology of Hepatitis E in England and Wales: A 10-Year Retrospective Surveillance Study, 2008–2017

(2019) Clarissa Oeser et al.   JOURNAL OF INFECTIOUS DISEASES

The Current Host Range of Hepatitis E Viruses

(2019) Scott P Kenney   Viruses-Basel

Detection of Hepatitis E Virus in Shellfish Harvesting Areas from Galicia (Northwestern Spain)

(2019) Enrique Rivadulla et al.   Viruses-Basel

Minimap2: pairwise alignment for nucleotide sequences

(2018) Heng Li   BIOINFORMATICS

Analysis of frozen strawberries involved in a large norovirus gastroenteritis outbreak using next generation sequencing and digital PCR

(2018) Christina Bartsch et al.   FOOD MICROBIOLOGY

First Report of the Presence of Hepatitis E Virus in Scottish-Harvested Shellfish Purchased at Retail Level

(2018) Zoe O’Hara et al.   Food and Environmental Virology

Hepatitis E infection in solid organ transplant recipients: An overlooked diagnosis?


(2018) Zay Htet et al.   CLINICAL NEPHROLOGY

Molecular characterization of human Sapovirus in untreated sewage in Italy by amplicon-based Sanger and next-generation sequencing

(2018) P. Mancini et al.   JOURNAL OF APPLIED MICROBIOLOGY

Global trends in infectious diseases of swine

(2018) Kimberly VanderWaal et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Hepatitis E virus infection in Europe: surveillance and descriptive epidemiology of confirmed cases, 2005 to 2015

(2017) Esther J Aspinall et al.   Eurosurveillance

Canu: scalable and accurate long-read assembly via adaptivek-mer weighting and repeat separation

(2017) Sergey Koren et al.   GENOME RESEARCH

Molecular detection and phylogenetic analysis of hepatitis E virus strains circulating in wild boars in south-central Italy

(2017) G. Aprea et al.   Transboundary and Emerging Diseases

Static and Evolving Norovirus Genotypes: Implications for Epidemiology and Immunity

(2017) Gabriel I. Parra et al.   PLoS Pathogens

Meat consumption is a major risk factor for hepatitis E virus infection

(2017) Ed Slot et al.   PLoS One

The Evolution and Transmission of Epidemic GII.17 Noroviruses

(2016) Jing Lu et al.   JOURNAL OF INFECTIOUS DISEASES

Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees

(2016) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

High Proportion of Asymptomatic Infections in an Outbreak of Hepatitis E Associated With a Spit-Roasted Piglet, France, 2013

(2015) Yvonnick Guillois et al.   CLINICAL INFECTIOUS DISEASES

Norovirus

(2015) Elizabeth Robilotti et al.   CLINICAL MICROBIOLOGY REVIEWS

High Prevalence of Hepatitis E Virus in Swedish Moose – A Phylogenetic Characterization and Comparison of the Virus from Different Regions

(2015) Jay Lin et al.   PLoS One

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

(2014) Lam-Tung Nguyen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Indigenous Hepatitis E in England and Wales From 2003 to 2012: Evidence of an Emerging Novel Phylotype of Viruses

(2013) S. Ijaz et al.   JOURNAL OF INFECTIOUS DISEASES

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Two-Year Systematic Study To Assess Norovirus Contamination in Oysters from Commercial Harvesting Areas in the United Kingdom

(2012) James A. Lowther et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Unipro UGENE: a unified bioinformatics toolkit

(2012) Konstantin Okonechnikov et al.   BIOINFORMATICS

Minor groove binder modification of widely used TaqMan probe for hepatitis E virus reduces risk of false negative real-time PCR results

(2012) Jeremy A. Garson et al.   JOURNAL OF VIROLOGICAL METHODS

An automated genotyping tool for enteroviruses and noroviruses

(2011) A. Kroneman et al.   JOURNAL OF CLINICAL VIROLOGY

Risk Assessment in Shellfish-Borne Outbreaks of Hepatitis A

(2009) R. M. Pinto et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY