Identification of ascorbate‐ and salicylate‐responsive miRNAs and verification of the spectral control of miR395 in Arabidopsis

Light-Dependent Regulatory Interactions between the Redox System and miRNAs and Their Biochemical and Physiological Effects in Plants

(2023) Zsolt Gulyás et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

RNA sequencing-based exploration of the effects of far-red light on microRNAs involved in the shade-avoidance response of D. officinale

(2023) Yifan Yang et al.   PeerJ

Rapid sequence and functional diversification of a miRNA superfamily targeting calcium signaling components in seed plants

(2022) Komal Attri et al.   NEW PHYTOLOGIST

DAVID: a web server for functional enrichment analysis and functional annotation of gene lists (2021 update)

(2022) Brad T Sherman et al.   NUCLEIC ACIDS RESEARCH

Sulfur signaling and starvation response in Arabidopsis

(2022) Daniela Ristova et al.   iScience

Far-Red Light Coordinates the Diurnal Changes in the Transcripts Related to Nitrate Reduction, Glutathione Metabolism and Antioxidant Enzymes in Barley

(2022) Eszter Balogh et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

ROS production and signalling in chloroplasts: cornerstones and evolving concepts

(2022) Christine H. Foyer et al.   PLANT JOURNAL

Hormone-mediated plant responses to light quality and quantity

(2022) Faiçal Brini et al.   ENVIRONMENTAL AND EXPERIMENTAL BOTANY

Role of miRNAs in regulation of SA-mediated upregulation of genes involved in folate and methionine metabolism in foxtail millet

(2022) Siyu Hou et al.   Frontiers in Plant Science

The miR172/ IDS1 signaling module confers salt tolerance through maintaining ROS homeostasis in cereal crops

(2021) Xiliu Cheng et al.   NEW PHYTOLOGIST

Light spectrum modifies the drought-induced changes of glutathione and free amino acid levels in wheat

(2021) M. Gyugos et al.   ACTA PHYSIOLOGIAE PLANTARUM

Differential expression of microRNAs in tomato leaves treated with different light qualities

(2020) Fei Dong et al.   BMC GENOMICS

Salicylic Acid Signalling in Plants

(2020) Tibor Janda et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Effect of red light on photosynthetic acclimation and the gene expression of certain light signalling components involved in the microRNA biogenesis in the extremophile Eutrema salsugineum

(2020) P. Pashkovskiy et al.   JOURNAL OF BIOTECHNOLOGY

Selenium transport and metabolism in plants: Phytoremediation and biofortification implications

(2020) Richard C. Trippe et al.   JOURNAL OF HAZARDOUS MATERIALS

Redox Balance-DDR-miRNA Triangle: Relevance in Genome Stability and Stress Responses in Plants

(2019) Sara Cimini et al.   Frontiers in Plant Science

Evidence of a significant role of glutathione reductase in the sulfur assimilation pathway

(2019) Anner Cohen et al.   PLANT JOURNAL

miR824/AGAMOUS-LIKE16 Module Integrates Recurring Environmental Heat Stress Changes to Fine-Tune Poststress Development

(2019) Henrik Mihály Szaker et al.   Frontiers in Plant Science

psRNATarget: a plant small RNA target analysis server (2017 release)

(2018) Xinbin Dai et al.   NUCLEIC ACIDS RESEARCH

Redox control of miRNAs and their targets in wheat

(2018) Jie Cao et al.   JOURNAL OF EXPERIMENTAL BOTANY

TPMCalculator: one-step software to quantify mRNA abundance of genomic features

(2018) Roberto Vera Alvarez et al.   BIOINFORMATICS

MicroRNA-mediated regulation of glutathione and methionine metabolism and its relevance for liver disease

(2016) Shelly C. Lu et al.   FREE RADICAL BIOLOGY AND MEDICINE

Blue light alters miR167 expression and microRNA-targeted auxin response factor genes in Arabidopsis thaliana plants

(2016) Pavel P. Pashkovskiy et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Expression of a Grapevine NAC Transcription Factor Gene Is Induced in Response to Powdery Mildew Colonization in Salicylic Acid-Independent Manner

(2016) Zsofia Toth et al.   Scientific Reports

Mechanisms of microRNA turnover

(2015) Maryam Sanei et al.   CURRENT OPINION IN PLANT BIOLOGY

Comparison of redox and gene expression changes during vegetative/generative transition in the crowns and leaves of chromosome 5A substitution lines of wheat under low-temperature condition

(2015) Ákos Boldizsár et al.   JOURNAL OF APPLIED GENETICS

The expanding world of small RNAs in plants

(2015) Filipe Borges et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Redox Regulation of Plant Development

(2013) Michael J. Considine et al.   ANTIOXIDANTS & REDOX SIGNALING

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

(2013) Y. Liao et al.   BIOINFORMATICS

Redox signaling mediates the expression of a sulfate-deprivation-inducible microRNA395 in Arabidopsis

(2013) Guru Jagadeeswaran et al.   PLANT JOURNAL

Redox control of plant growth and development

(2013) Gábor Kocsy et al.   PLANT SCIENCE

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

miR395 is a general component of the sulfate assimilation regulatory network in Arabidopsis

(2012) Colette A. Matthewman et al.   FEBS LETTERS

MATH/BTB CRL3 Receptors Target the Homeodomain-Leucine Zipper ATHB6 to Modulate Abscisic Acid Signaling

(2011) E. Lechner et al.   DEVELOPMENTAL CELL

KEGG for integration and interpretation of large-scale molecular data sets

(2011) M. Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Redox changes during cold acclimation affect freezing tolerance but not the vegetative/reproductive transition of the shoot apex in wheat

(2011) A. Soltész et al.   PLANT BIOLOGY

ROS and redox signalling in the response of plants to abiotic stress

(2011) NOBUHIRO SUZUKI et al.   PLANT CELL AND ENVIRONMENT

Interplay of SLIM1 and miR395 in the regulation of sulfate assimilation in Arabidopsis

(2011) Cintia G. Kawashima et al.   PLANT JOURNAL

Role of plant autophagy in stress response

(2011) Shaojie Han et al.   Protein & Cell

Identification and analysis of seven H2O2-responsive miRNAs and 32 new miRNAs in the seedlings of rice (Oryza sativa L. ssp. indica)

(2010) Tian Li et al.   NUCLEIC ACIDS RESEARCH

Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences

(2010) Jeremy Goecks et al.   GENOME BIOLOGY

Insights into the mechanism of plant development: Interactions of miRNAs pathway with phytohormone response

(2009) Qing Liu et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Expression analysis of phytohormone-regulated microRNAs in rice, implying their regulation roles in plant hormone signaling

(2009) Qing Liu et al.   FEBS LETTERS

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY