Rapid sequence and functional diversification of a miRNA superfamily targeting calcium signaling components in seed plants

sRNAanno—a database repository of uniformly annotated small RNAs in plants

(2021) Chengjie Chen et al.   Horticulture Research

Rice miR1432 Fine-Tunes the Balance of Yield and Blast Disease Resistance via Different Modules

(2021) Yan Li et al.   Rice

MicroRNAs and Their Regulatory Roles in Plant–Environment Interactions

(2019) Xianwei Song et al.   Annual Review of Plant Biology

Cation and peptide binding properties of CML7, a calmodulin-like protein from Arabidopsis thaliana

(2019) Matteo Trande et al.   JOURNAL OF INORGANIC BIOCHEMISTRY

miR1432-OsACOT (Acyl-CoA thioesterase) module determines grain yield via enhancing grain filling rate in rice

(2018) Ya-Fan Zhao et al.   PLANT BIOTECHNOLOGY JOURNAL

miRBase: from microRNA sequences to function

(2018) Ana Kozomara et al.   NUCLEIC ACIDS RESEARCH

Calcium Pumps and Interacting BON1 Protein Modulate Calcium Signature, Stomatal Closure, and Plant Immunity

(2017) Dong-Lei Yang et al.   PLANT PHYSIOLOGY

Global Analysis of Small RNA Dynamics during Seed Development of Picea glauca and Arabidopsis thaliana Populations Reveals Insights on their Evolutionary Trajectories

(2017) Yang Liu et al.   Frontiers in Plant Science

Small RNA and degradome profiling reveals miRNA regulation in the seed germination of ancient eudicot Nelumbo nucifera

(2016) Jihong Hu et al.   BMC GENOMICS

An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG IV

(2016)   BOTANICAL JOURNAL OF THE LINNEAN SOCIETY

Deep-sequence profiling of miRNAs and their target prediction in Monotropa hypopitys

(2016) Anna V. Shchennikova et al.   PLANT MOLECULAR BIOLOGY

Genome-Wide Identification of MicroRNAs and Their Targets in the Leaves and Fruits of Eucommia ulmoides Using High-Throughput Sequencing

(2016) Lin Wang et al.   Frontiers in Plant Science

Identification and comparative analysis of differentially expressed miRNAs in leaves of two wheat (Triticum aestivum L.) genotypes during dehydration stress

(2015) Xingli Ma et al.   BMC PLANT BIOLOGY

Evolution of NBS-LRR Gene Copies among Dicot Plants and its Regulation by Members of the miR482/2118 Superfamily of miRNAs

(2015) Víctor M. González et al.   Molecular Plant

CaM and CML emergence in the green lineage

(2015) Xiaoyang Zhu et al.   TRENDS IN PLANT SCIENCE

MicroRNA Expression Profile during Aphid Feeding in Chrysanthemum (Chrysanthemum morifolium)

(2015) Xiaolong Xia et al.   PLoS One

The Diversity, Biogenesis, and Activities of Endogenous Silencing Small RNAs inArabidopsis

(2014) Nicolas G. Bologna et al.   Annual Review of Plant Biology

A Comprehensive Genome-Wide Study on Tissue-Specific and Abiotic Stress-Specific miRNAs in Triticum aestivum

(2014) Ritu Pandey et al.   PLoS One

Sample sequencing of vascular plants demonstrates widespread conservation and divergence of microRNAs

(2014) Ricardo A. Chávez Montes et al.   Nature Communications

The calmodulin-like protein CML43 functions as a salicylic-acid-inducible root-specific Ca2+sensor inArabidopsis

(2013) Kyle W. Bender et al.   BIOCHEMICAL JOURNAL

Genome-wide identification of Thellungiella salsuginea microRNAs with putative roles in the salt stress response

(2013) Quan Zhang et al.   BMC PLANT BIOLOGY

bex-db: Bioinformatics workbench for comprehensive analysis of barley-expressed genes

(2013) Tsuyoshi Tanaka et al.   BREEDING SCIENCE

Novel bioresources for studies ofBrassica oleracea: identification of a kale MYB transcription factor responsible for glucosinolate production

(2013) Ryoichi Araki et al.   PLANT BIOTECHNOLOGY JOURNAL

MicroRNA Superfamilies Descended from miR390 and Their Roles in Secondary Small Interfering RNA Biogenesis in Eudicots

(2013) Rui Xia et al.   PLANT CELL

Phased, Secondary, Small Interfering RNAs in Posttranscriptional Regulatory Networks

(2013) Q. Fei et al.   PLANT CELL

Identification of MiRNA from Eggplant (Solanum melongena L.) by Small RNA Deep Sequencing and Their Response to Verticillium dahliae Infection

(2013) Liu Yang et al.   PLoS One

Large-Scale Collection and Analysis of Full-Length cDNAs from Brachypodium distachyon and Integration with Pooideae Sequence Resources

(2013) Keiichi Mochida et al.   PLoS One

Construction and analysis of EST libraries of the trans-polyisoprene producing plant, Eucommia ulmoides Oliver

(2012) Nobuaki Suzuki et al.   PLANTA

Analysis of expressed sequence tags generated from full-length enriched cDNA libraries of melon

(2011) Christian Clepet et al.   BMC GENOMICS

Discovery of barley miRNAs through deep sequencing of short reads

(2011) Andreas W Schreiber et al.   BMC GENOMICS

T-Coffee: a web server for the multiple sequence alignment of protein and RNA sequences using structural information and homology extension

(2011) P. Di Tommaso et al.   NUCLEIC ACIDS RESEARCH

Survey of the genetic information carried in the genome of Eucalyptus camaldulensis

(2011) Hideki Hirakawa et al.   Plant Biotechnology

Function and Evolution of a MicroRNA That Regulates a Ca2+-ATPase and Triggers the Formation of Phased Small Interfering RNAs in Tomato Reproductive Growth

(2011) Ying Wang et al.   PLANT CELL

Interplay of SLIM1 and miR395 in the regulation of sulfate assimilation in Arabidopsis

(2011) Cintia G. Kawashima et al.   PLANT JOURNAL

Viral suppressors of RNA silencing

(2011) József Burgyán et al.   TRENDS IN PLANT SCIENCE

The Language of Calcium Signaling

(2010) Antony N. Dodd et al.   Annual Review of Plant Biology

Unique functionality of 22-nt miRNAs in triggering RDR6-dependent siRNA biogenesis from target transcripts in Arabidopsis

(2010) Josh T Cuperus et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

TranslatorX: multiple alignment of nucleotide sequences guided by amino acid translations

(2010) Federico Abascal et al.   NUCLEIC ACIDS RESEARCH

MicroRNA395 mediates regulation of sulfate accumulation and allocation in Arabidopsis thaliana

(2010) Gang Liang et al.   PLANT JOURNAL

Comparative Functional Genomic Analysis of Solanum Glandular Trichome Types

(2010) E. T. McDowell et al.   PLANT PHYSIOLOGY

22-nucleotide RNAs trigger secondary siRNA biogenesis in plants

(2010) H.-M. Chen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Small RNAs and Their Roles in Plant Development

(2009) Xuemei Chen   Annual Review of Cell and Developmental Biology

A Genome-Wide Characterization of MicroRNA Genes in Maize

(2009) Lifang Zhang et al.   PLoS Genetics

Large-scale collection and annotation of full-length enriched cDNAs from a model halophyte, Thellungiella halophila

(2008) Teruaki Taji et al.   BMC PLANT BIOLOGY

Identification of novel and candidate miRNAs in rice by high throughput sequencing

(2008) Ramanjulu Sunkar et al.   BMC PLANT BIOLOGY

Sorting of Small RNAs into Arabidopsis Argonaute Complexes Is Directed by the 5′ Terminal Nucleotide

(2008) Shijun Mi et al.   CELL

Specificity of ARGONAUTE7-miR390 Interaction and Dual Functionality in TAS3 Trans-Acting siRNA Formation

(2008) Taiowa A. Montgomery et al.   CELL

Endogenous siRNA and miRNA Targets Identified by Sequencing of the Arabidopsis Degradome

(2008) Charles Addo-Quaye et al.   CURRENT BIOLOGY

Global identification of microRNA–target RNA pairs by parallel analysis of RNA ends

(2008) Marcelo A German et al.   NATURE BIOTECHNOLOGY

Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs)

(2008) C. Lu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Plant ARGONAUTES

(2008) Hervé Vaucheret   TRENDS IN PLANT SCIENCE