Community-developed checklists for publishing images and image analyses
Published 2023 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Community-developed checklists for publishing images and image analyses
Authors
Keywords
-
Journal
NATURE METHODS
Volume -, Issue -, Pages -
Publisher
Springer Science and Business Media LLC
Online
2023-09-15
DOI
10.1038/s41592-023-01987-9
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- A biologist’s guide to planning and performing quantitative bioimaging experiments
- (2023) Rebecca A. Senft et al. PLOS BIOLOGY
- The BioImage Archive - building a home for life-sciences microscopy data
- (2022) Matthew Hartley et al. JOURNAL OF MOLECULAR BIOLOGY
- Many researchers were not compliant with their published data sharing statement: mixed-methods study
- (2022) Mirko Gabelica et al. JOURNAL OF CLINICAL EPIDEMIOLOGY
- A Hitchhiker's guide through the bio‐image analysis software universe
- (2022) Robert Haase et al. FEBS LETTERS
- Quality assessment in light microscopy for routine use through simple tools and robust metrics
- (2022) Orestis Faklaris et al. JOURNAL OF CELL BIOLOGY
- Reproducible image handling and analysis
- (2021) Kota Miura et al. EMBO JOURNAL
- A guide to accurate reporting in digital image acquisition – can anyone replicate your microscopy data?
- (2021) John M. Heddleston et al. JOURNAL OF CELL SCIENCE
- A guide to accurate reporting in digital image processing – can anyone reproduce your quantitative analysis?
- (2021) Jesse Aaron et al. JOURNAL OF CELL SCIENCE
- Creating clear and informative image-based figures for scientific publications
- (2021) Helena Jambor et al. PLOS BIOLOGY
- CellProfiler 4: improvements in speed, utility and usability
- (2021) David R. Stirling et al. BMC BIOINFORMATICS
- QUAREP‐LiMi: A community‐driven initiative to establish guidelines for quality assessment and reproducibility for instruments and images in light microscopy
- (2021) Glyn Nelson et al. JOURNAL OF MICROSCOPY
- Best practices and tools for reporting reproducible fluorescence microscopy methods
- (2021) Paula Montero Llopis et al. NATURE METHODS
- QUAREP-LiMi: a community endeavor to advance quality assessment and reproducibility in light microscopy
- (2021) Ulrike Boehm et al. NATURE METHODS
- Data sharing practices and data availability upon request differ across scientific disciplines
- (2021) Leho Tedersoo et al. Scientific Data
- Python power-up: new image tool visualizes complex data
- (2021) Jeffrey M. Perkel NATURE
- Journals adopt AI to spot duplicated images in manuscripts
- (2021) Richard Van Noorden NATURE
- Micro-Meta App: an interactive tool for collecting microscopy metadata based on community specifications
- (2021) Alessandro Rigano et al. NATURE METHODS
- Towards community-driven metadata standards for light microscopy: tiered specifications extending the OME model
- (2021) Mathias Hammer et al. NATURE METHODS
- Avoiding a replication crisis in deep-learning-based bioimage analysis
- (2021) Romain F. Laine et al. NATURE METHODS
- Optimizing live-cell fluorescence imaging conditions to minimize phototoxicity
- (2020) Alex Kiepas et al. JOURNAL OF CELL SCIENCE
- Publishers launch joint effort to tackle altered images in research papers
- (2020) Richard Van Noorden NATURE
- Gender imbalance in medical imaging datasets produces biased classifiers for computer-aided diagnosis
- (2020) Agostina J. Larrazabal et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- nucleAIzer: A Parameter-free Deep Learning Framework for Nucleus Segmentation Using Image Style Transfer
- (2020) Reka Hollandi et al. Cell Systems
- Science Forum: Imaging methods are vastly underreported in biomedical research
- (2020) Guillermo Marques et al. eLife
- AggreCount: An unbiased image analysis tool for identifying and quantifying cellular aggregates in a spatially-defined manner
- (2020) Jacob Aaron Klickstein et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Cellpose: a generalist algorithm for cellular segmentation
- (2020) Carsen Stringer et al. NATURE METHODS
- ImageJ SurfCut: a user-friendly pipeline for high-throughput extraction of cell contours from 3D image stacks
- (2019) Özer Erguvan et al. BMC BIOLOGY
- Defining host–pathogen interactions employing an artificial intelligence workflow
- (2019) Daniel Fisch et al. eLife
- Rigor and Reproducibility in Confocal Fluorescence Microscopy
- (2019) James Jonkman CYTOMETRY PART A
- Dissecting racial bias in an algorithm used to manage the health of populations
- (2019) Ziad Obermeyer et al. SCIENCE
- Replication Study: Biomechanical remodeling of the microenvironment by stromal caveolin-1 favors tumor invasion and metastasis
- (2019) Mee Rie Sheen et al. eLife
- Automatic detection of image manipulations in the biomedical literature
- (2018) Enrico M. Bucci Cell Death & Disease
- Analysis and Correction of Inappropriate Image Duplication: the Molecular and Cellular Biology Experience
- (2018) Elisabeth M. Bik et al. MOLECULAR AND CELLULAR BIOLOGY
- Content-aware image restoration: pushing the limits of fluorescence microscopy
- (2018) Martin Weigert et al. NATURE METHODS
- A call for public archives for biological image data
- (2018) Jan Ellenberg et al. NATURE METHODS
- U-Net: deep learning for cell counting, detection, and morphometry
- (2018) Thorsten Falk et al. NATURE METHODS
- Avoiding common pitfalls of manuscript and figure preparation
- (2017) Súil Collins et al. FEBS Journal
- TrackMate: An open and extensible platform for single-particle tracking
- (2017) Jean-Yves Tinevez et al. METHODS
- Image Data Resource: a bioimage data integration and publication platform
- (2017) Eleanor Williams et al. NATURE METHODS
- Assessing phototoxicity in live fluorescence imaging
- (2017) P Philippe Laissue et al. NATURE METHODS
- 1,500 scientists lift the lid on reproducibility
- (2016) Monya Baker NATURE
- Towards a Systematic Screening Tool for Quality Assurance and Semiautomatic Fraud Detection for Images in the Life Sciences
- (2016) Lars Koppers et al. SCIENCE AND ENGINEERING ETHICS
- The Prevalence of Inappropriate Image Duplication in Biomedical Research Publications
- (2016) Elisabeth M. Bik et al. mBio
- A genome-wide resource for the analysis of protein localisation in Drosophila
- (2016) Mihail Sarov et al. eLife
- The FAIR Guiding Principles for scientific data management and stewardship
- (2016) Mark D. Wilkinson et al. Scientific Data
- A Review of Color Blindness for Microscopists: Guidelines and Tools for Accommodating and Coping with Color Vision Deficiency
- (2015) Douglas R. Keene MICROSCOPY AND MICROANALYSIS
- Systematic imaging reveals features and changing localization of mRNAs in Drosophila development
- (2015) Helena Jambor et al. eLife
- Manipulation and Misconduct in the Handling of Image Data
- (2013) C. Martin et al. PLANT CELL
- Biological imaging software tools
- (2012) Kevin W Eliceiri et al. NATURE METHODS
- Fiji: an open-source platform for biological-image analysis
- (2012) Johannes Schindelin et al. NATURE METHODS
- NIH Image to ImageJ: 25 years of image analysis
- (2012) Caroline A Schneider et al. NATURE METHODS
- Metadata matters: access to image data in the real world
- (2010) Melissa Linkert et al. JOURNAL OF CELL BIOLOGY
- Avoiding Twisted Pixels: Ethical Guidelines for the Appropriate Use and Manipulation of Scientific Digital Images
- (2010) Douglas W. Cromey SCIENCE AND ENGINEERING ETHICS
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started