Genetic architecture of ear traits based on association mapping and co-expression networks in maize inbred lines and hybrids

De novo genome assembly and analyses of 12 founder inbred lines provide insights into maize heterosis

(2023) Baobao Wang et al.   NATURE GENETICS

The Genetic Structures and Molecular Mechanisms Underlying Ear Traits in Maize (Zea mays L.)

(2023) Zhenying Dong et al.   Cells

The genetic architecture of the dynamic changes in grain moisture in maize

(2021) Wenqiang Li et al.   PLANT BIOTECHNOLOGY JOURNAL

Genetic analysis of ear‐related traits under different pollination treatments in maize ( Zea mays )

(2021) Lin Yang et al.   PLANT BREEDING

Genetic Dissection of Grain Yield of Maize and Yield-Related Traits Through Association Mapping and Genomic Prediction

(2021) Juan Ma et al.   Frontiers in Plant Science

Genetic variation in YIGE1 contributes to ear length and grain yield in maize

(2021) Yun Luo et al.   NEW PHYTOLOGIST

A serine/threonine protein kinase encoding gene KERNEL NUMBER PER ROW6 regulates maize grain yield

(2020) Haitao Jia et al.   Nature Communications

Genome‐wide association studies and QTL mapping uncover the genetic architecture of ear tip‐barrenness in maize

(2020) Zhaoling Li et al.   PHYSIOLOGIA PLANTARUM

Identification of Ear Morphology Genes in Maize (Zea mays L.) Using Selective Sweeps and Association Mapping

(2020) Ting Li et al.   Frontiers in Genetics

Genome‐wide identification and analysis of heterotic loci in three maize hybrids

(2019) Hongjun Liu et al.   PLANT BIOTECHNOLOGY JOURNAL

Genome-Wide Association Study Using Historical Breeding Populations Discovers Genomic Regions Involved in High-Quality Rice

(2018) Gastón Quero et al.   Plant Genome

Combining Three Mapping Strategies to Reveal Quantitative Trait Loci and Candidate Genes for Maize Ear Length

(2018) Bo Zhou et al.   Plant Genome

Dynamic patterns of gene expression additivity and regulatory variation throughout maize development

(2018) Peng Zhou et al.   Molecular Plant

Integrating co-expression networks with GWAS to prioritize causal genes in maize

(2018) Robert Schaefer et al.   PLANT CELL

Improved maize reference genome with single-molecule technologies

(2017) Yinping Jiao et al.   NATURE

Signaling from maize organ primordia via FASCIATED EAR3 regulates stem cell proliferation and yield traits

(2016) Byoung Il Je et al.   NATURE GENETICS

Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown

(2016) Mihaela Pertea et al.   Nature Protocols

QTL Mapping of Kernel Number-Related Traits and Validation of One Major QTL for Ear Length in Maize

(2016) Dongao Huo et al.   PLoS One

HISAT: a fast spliced aligner with low memory requirements

(2015) Daehwan Kim et al.   NATURE METHODS

Genome-wide dissection of the maize ear genetic architecture using multiple populations

(2015) Yingjie Xiao et al.   NEW PHYTOLOGIST

Auxin signaling modules regulate maize inflorescence architecture

(2015) Mary Galli et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genomic analysis of hybrid rice varieties reveals numerous superior alleles that contribute to heterosis

(2015) Xuehui Huang et al.   Nature Communications

Clustered spikelets 4, encoding a putative cytochrome P450 protein CYP724B1, is essential for rice panicle development

(2014) Min Guo et al.   CHINESE SCIENCE BULLETIN

MaizeSBP-boxtranscription factorsunbranched2andunbranched3affect yield traits by regulating the rate of lateral primordia initiation

(2014) George S. Chuck et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Multi-environment multi-QTL association mapping identifies disease resistance QTL in barley germplasm from Latin America

(2014) Lucia Gutiérrez et al.   THEORETICAL AND APPLIED GENETICS

Regulatory modules controlling maize inflorescence architecture

(2013) A. L. Eveland et al.   GENOME RESEARCH

Genome-wide efficient mixed-model analysis for association studies

(2012) Xiang Zhou et al.   NATURE GENETICS

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

BEAGLE: An Application Programming Interface and High-Performance Computing Library for Statistical Phylogenetics

(2011) Daniel L. Ayres et al.   SYSTEMATIC BIOLOGY

Mapping of quantitative trait loci for kernel row number in maize across seven environments

(2010) Ming Lu et al.   MOLECULAR BREEDING

Mapping QTLs for grain yield and yield components under high and low phosphorus treatments in maize (Zea mays L.)

(2010) Meng Li et al.   PLANT SCIENCE

The Genetic Architecture of Maize Flowering Time

(2009) E. S. Buckler et al.   SCIENCE

Floral meristem initiation and meristem cell fate are regulated by the maize AP2 genes ids1 and sid1

(2008) G. Chuck et al.   DEVELOPMENT