Genome-wide analysis of shoot growth-associated alternative splicing in moso bamboo

Genome-wide analysis of alternative splicing events inHordeum vulgare: Highlighting retention of intron-based splicing and its possible function through network analysis

(2015) Bahman Panahi et al.   FEBS LETTERS

Solanum lycopersicum AUXIN RESPONSE FACTOR 9 regulates cell division activity during early tomato fruit development

(2015) Maaike de Jong et al.   JOURNAL OF EXPERIMENTAL BOTANY

Genome-Wide Analysis of Alternative Splicing Landscapes Modulated during Plant-Virus Interactions inBrachypodium distachyon

(2015) Kranthi K. Mandadi et al.   PLANT CELL

Genome-wide analysis of alternative splicing of pre-mRNA under salt stress in Arabidopsis

(2014) Feng Ding et al.   BMC GENOMICS

The GRAS gene family in pine: transcript expression patterns associated with the maturation-related decline of competence to form adventitious roots

(2014) Dolores Abarca et al.   BMC PLANT BIOLOGY

A deep survey of alternative splicing in grape reveals changes in the splicing machinery related to tissue, stress condition and genotype

(2014) Nicola Vitulo et al.   BMC PLANT BIOLOGY

CDD: NCBI's conserved domain database

(2014) Aron Marchler-Bauer et al.   NUCLEIC ACIDS RESEARCH

Genome-Wide Analysis of Alternative Splicing in Zea mays: Landscape and Genetic Regulation

(2014) S. R. Thatcher et al.   PLANT CELL

Global Dissection of Alternative Splicing in Paleopolyploid Soybean

(2014) Yanting Shen et al.   PLANT CELL

AUXIN RESPONSE FACTOR 3integrates the functions ofAGAMOUSandAPETALA2in floral meristem determinacy

(2014) Xigang Liu et al.   PLANT JOURNAL

Genome-Wide Analysis of Heat-Sensitive Alternative Splicing in Physcomitrella patens

(2014) C.-Y. Chang et al.   PLANT PHYSIOLOGY

Genome-wide survey of Alternative Splicing in Sorghum Bicolor

(2014) Bahman Panahi et al.   PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS

Next-generation sequencing-based mRNA and microRNA expression profiling analysis revealed pathways involved in the rapid growth of developing culms in Moso bamboo

(2013) Cai-yun He et al.   BMC PLANT BIOLOGY

Genome-Wide Landscape of Alternative Splicing Events in Brachypodium distachyon

(2013) B. Walters et al.   DNA RESEARCH

The draft genome of the fast-growing non-timber forest species moso bamboo (Phyllostachys heterocycla)

(2013) Zhenhua Peng et al.   NATURE GENETICS

Alternative Splicing at the Intersection of Biological Timing, Development, and Stress Responses

(2013) D. Staiger et al.   PLANT CELL

Complexity of the Alternative Splicing Landscape in Plants

(2013) A. S. N. Reddy et al.   PLANT CELL

The Differential Transcription Network between Embryo and Endosperm in the Early Developing Maize Seed

(2013) X. Lu et al.   PLANT PHYSIOLOGY

Transcriptome Sequencing and Analysis of the Fast Growing Shoots of Moso Bamboo (Phyllostachys edulis)

(2013) Zhenhua Peng et al.   PLoS One

Transcriptome survey reveals increased complexity of the alternative splicing landscape inArabidopsis

(2012) Yamile Marquez et al.   GENOME RESEARCH

Temporal and Spatial Profiling of Internode Elongation-Associated Protein Expression in Rapidly Growing Culms of Bamboo

(2012) Kai Cui et al.   JOURNAL OF PROTEOME RESEARCH

Pattern of Auxin and Cytokinin Responses for Shoot Meristem Induction Results from the Regulation of Cytokinin Biosynthesis by AUXIN RESPONSE FACTOR3

(2012) Z. J. Cheng et al.   PLANT PHYSIOLOGY

Comparative analysis of information contents relevant to recognition of introns in many species

(2011) Hiroaki Iwata et al.   BMC GENOMICS

Genome-wide identification and expression profiling of auxin response factor (ARF) gene family in maize

(2011) Hongyan Xing et al.   BMC GENOMICS

Evolution of Exon-Intron Structure and Alternative Splicing

(2011) Tomasz E. Koralewski et al.   PLoS One

Deep RNA sequencing at single base-pair resolution reveals high complexity of the rice transcriptome

(2010) G. Zhang et al.   GENOME RESEARCH

Xyloglucan endotransglucosylase and cell wall extensibility

(2010) E. Miedes et al.   JOURNAL OF PLANT PHYSIOLOGY

Genome sequencing and analysis of the model grass Brachypodium distachyon

(2010) John P. Vogel et al.   NATURE

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

Genome-wide mapping of alternative splicing in Arabidopsis thaliana

(2009) S. A. Filichkin et al.   GENOME RESEARCH

A regulated auxin minimum is required for seed dispersal in Arabidopsis

(2009) Karim Sorefan et al.   NATURE

Extensive coupling of alternative splicing of pre-mRNAs of serine/arginine (SR) genes with nonsense-mediated decay

(2009) Saiprasad G. Palusa et al.   NEW PHYTOLOGIST

Arabidopsis AUXIN RESPONSE FACTOR6 and 8 Regulate Jasmonic Acid Biosynthesis and Floral Organ Development via Repression of Class 1 KNOX Genes

(2009) Ryo Tabata et al.   PLANT AND CELL PHYSIOLOGY

Alternative isoform regulation in human tissue transcriptomes

(2008) Eric T. Wang et al.   NATURE

Requirement of B2-Type Cyclin-Dependent Kinases for Meristem Integrity in Arabidopsis thaliana

(2008) S. U. Andersen et al.   PLANT CELL