Comparative analysis of information contents relevant to recognition of introns in many species

Pairagon: a highly accurate, HMM-based cDNA-to-genome aligner

(2009) David V. Lu et al.   BIOINFORMATICS

Evidence for Multiple Independent Origins of trans-Splicing in Metazoa

(2009) V. Douris et al.   MOLECULAR BIOLOGY AND EVOLUTION

Direct mapping and alignment of protein sequences onto genomic sequence

(2008) Osamu Gotoh   BIOINFORMATICS

Splign: algorithms for computing spliced alignments with identification of paralogs

(2008) Yuri Kapustin et al.   Biology Direct

Improved accuracy of multiple ncRNA alignment by incorporating structural information into a MAFFT-based framework

(2008) Kazutaka Katoh et al.   BMC BIOINFORMATICS

Evolution of Spliceosomal snRNA Genes in Metazoan Animals

(2008) Manuela Marz et al.   JOURNAL OF MOLECULAR EVOLUTION

Computational screen for spliceosomal RNA genes aids in defining the phylogenetic distribution of major and minor spliceosomal components

(2008) Marcela Dávila López et al.   NUCLEIC ACIDS RESEARCH

A space-efficient and accurate method for mapping and aligning cDNA sequences onto genomic sequence

(2008) Osamu Gotoh   NUCLEIC ACIDS RESEARCH

Rfam: updates to the RNA families database

(2008) P. P. Gardner et al.   NUCLEIC ACIDS RESEARCH