Genome-Wide Landscape of Alternative Splicing Events in Brachypodium distachyon

Unproductive alternative splicing and nonsense mRNAs: A widespread phenomenon among plant circadian clock genes

(2012) Sergei A Filichkin et al.   Biology Direct

Stress-Induced Alternative Splicing Provides a Mechanism for the Regulation of MicroRNA Processing in Arabidopsis thaliana

(2012) Kang Yan et al.   MOLECULAR CELL

Transgene regulation in plants by alternative splicing of a suicide exon

(2012) Scott F. Hickey et al.   NUCLEIC ACIDS RESEARCH

An hnRNP-like RNA-binding protein affects alternative splicing by in vivo interaction with transcripts in Arabidopsis thaliana

(2012) Corinna Streitner et al.   NUCLEIC ACIDS RESEARCH

A Self-Regulatory Circuit of CIRCADIAN CLOCK-ASSOCIATED1 Underlies the Circadian Clock Regulation of Temperature Responses inArabidopsis

(2012) Pil Joon Seo et al.   PLANT CELL

Alternative splicing of the auxin biosynthesis gene YUCCA4 determines its subcellular compartmentation

(2012) Verena Kriechbaumer et al.   PLANT JOURNAL

Interactions of SR45, an SR-like protein, with spliceosomal proteins and an intronic sequence: insights into regulated splicing

(2012) Irene S. Day et al.   PLANT JOURNAL

Tissue-specific profiling of theArabidopsis thalianaauxin metabolome

(2012) Ondřej Novák et al.   PLANT JOURNAL

Predicting the Impact of Alternative Splicing on Plant MADS Domain Protein Function

(2012) Edouard I. Severing et al.   PLoS One

Alternative splicing in plants – coming of age

(2012) Naeem H. Syed et al.   TRENDS IN PLANT SCIENCE

Deciphering the Plant Splicing Code: Experimental and Computational Approaches for Predicting Alternative Splicing and Splicing Regulatory Elements

(2012) Anireddy S. N. Reddy et al.   Frontiers in Plant Science

Phytozome: a comparative platform for green plant genomics

(2011) David M. Goodstein et al.   NUCLEIC ACIDS RESEARCH

Alternative splicing and nonsense-mediated decay modulate expression of important regulatory genes in Arabidopsis

(2011) Maria Kalyna et al.   NUCLEIC ACIDS RESEARCH

Brachypodium as a Model for the Grasses: Today and the Future

(2011) Jelena Brkljacic et al.   PLANT PHYSIOLOGY

Alternative splicing: Enhancing ability to cope with stress via transcriptome plasticity

(2011) Anna M. Mastrangelo et al.   PLANT SCIENCE

Evolution of Exon-Intron Structure and Alternative Splicing

(2011) Tomasz E. Koralewski et al.   PLoS One

Two splice variants of the IDD14 transcription factor competitively form nonfunctional heterodimers which may regulate starch metabolism

(2011) Pil Joon Seo et al.   Nature Communications

Genome-wide survey of alternative splicing in the grass Brachypodium distachyon: a emerging model biosystem for plant functional genomics

(2010) Gaurav Sablok et al.   BIOTECHNOLOGY LETTERS

Prevalence of alternative splicing choices in Arabidopsis thaliana

(2010) Adam C English et al.   BMC PLANT BIOLOGY

Brachypodium distachyon genomics for sustainable food and fuel production

(2010) Michael W Bevan et al.   CURRENT OPINION IN BIOTECHNOLOGY

Extensive Divergence in Alternative Splicing Patterns after Gene and Genome Duplication During the Evolutionary History of Arabidopsis

(2010) P. G. Zhang et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genome sequencing and analysis of the model grass Brachypodium distachyon

(2010) John P. Vogel et al.   NATURE

Comparative Genomics of Flowering Time Pathways Using Brachypodium distachyon as a Model for the Temperate Grasses

(2010) Janet A. Higgins et al.   PLoS One

A conserved alternative splicing event in plants reveals an ancient exonization of 5S rRNA that regulates TFIIIA

(2010) W. Brad Barbazuk   RNA Biology

Genome-wide mapping of alternative splicing in Arabidopsis thaliana

(2009) S. A. Filichkin et al.   GENOME RESEARCH

Alternative splicing and gene duplication differentially shaped the regulation of isochorismate synthase in Populus and Arabidopsis

(2009) Y. Yuan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Characterization of paralogous protein families in rice

(2008) Haining Lin et al.   BMC PLANT BIOLOGY

Plant Spliceosomal Introns: Not Only Cut and Paste

(2008) L. Morello et al.   CURRENT GENOMICS

Genome-wide analyses of alternative splicing in plants: Opportunities and challenges

(2008) W. B. Barbazuk et al.   GENOME RESEARCH

CDD: specific functional annotation with the Conserved Domain Database

(2008) A. Marchler-Bauer et al.   NUCLEIC ACIDS RESEARCH

Characterization and comparison of intron structure and alternative splicing between Medicago truncatula, Populus trichocarpa, Arabidopsis and rice

(2008) Jong-Min Baek et al.   PLANT MOLECULAR BIOLOGY