Population genomics of the filarial nematode parasite Wuchereria bancrofti from mosquitoes

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

Whole-genome sequencing reveals absence of recent gene flow and separate demographic histories forAnopheles punctulatusmosquitoes in Papua New Guinea

(2015) Kyle Logue et al.   MOLECULAR ECOLOGY

Modeling malaria genomics reveals transmission decline and rebound in Senegal

(2015) Rachel F. Daniels et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cessation of Mass Drug Administration for Lymphatic Filariasis in Zanzibar in 2006: Was Transmission Interrupted?

(2015) Maria P. Rebollo et al.   PLoS Neglected Tropical Diseases

Ribose 5-Phosphate Isomerase B Knockdown Compromises Trypanosoma brucei Bloodstream Form Infectivity

(2015) Inês Loureiro et al.   PLoS Neglected Tropical Diseases

ANGSD: Analysis of Next Generation Sequencing Data

(2014) Thorfinn Sand Korneliussen et al.   BMC BIOINFORMATICS

SNPhylo: a pipeline to construct a phylogenetic tree from huge SNP data

(2014) Tae-Ho Lee et al.   BMC GENOMICS

PopGenome: An Efficient Swiss Army Knife for Population Genomic Analyses in R

(2014) Bastian Pfeifer et al.   MOLECULAR BIOLOGY AND EVOLUTION

Inferring human population size and separation history from multiple genome sequences

(2014) Stephan Schiffels et al.   NATURE GENETICS

The global distribution and transmission limits of lymphatic filariasis: past and present

(2014) Jorge Cano et al.   Parasites & Vectors

Assessing Progress in Reducing the At-Risk Population after 13 Years of the Global Programme to Eliminate Lymphatic Filariasis

(2014) Pamela J. Hooper et al.   PLoS Neglected Tropical Diseases

Seroprevalence and Spatial Epidemiology of Lymphatic Filariasis in American Samoa after Successful Mass Drug Administration

(2014) Colleen L. Lau et al.   PLoS Neglected Tropical Diseases

Progress and Impact of 13 Years of the Global Programme to Eliminate Lymphatic Filariasis on Reducing the Burden of Filarial Disease

(2014) K. D. Ramaiah et al.   PLoS Neglected Tropical Diseases

Haplotype Estimation Using Sequencing Reads

(2013) Olivier Delaneau et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Dissecting structural and nucleotide genome-wide variation in inbred Iberian pigs

(2013) Anna Esteve-Codina et al.   BMC GENOMICS

Lymphatic filariasis control in Tanzania: effect of six rounds of mass drug administration with ivermectin and albendazole on infection and transmission

(2013) Paul E Simonsen et al.   BMC INFECTIOUS DISEASES

Genomics of Loa loa, a Wolbachia-free filarial parasite of humans

(2013) Christopher A Desjardins et al.   NATURE GENETICS

Population Genetics of the Filarial Worm Wuchereria bancrofti in a Post-treatment Region of Papua New Guinea: Insights into Diversity and Life History

(2013) Scott T. Small et al.   PLoS Neglected Tropical Diseases

Mosquito-Parasite Interactions Can Shape Filariasis Transmission Dynamics and Impact Elimination Programs

(2013) Sara M. Erickson et al.   PLoS Neglected Tropical Diseases

The complete mitochondrial genome sequence of the filarial nematode Wuchereria bancrofti from three geographic isolates provides evidence of complex demographic history

(2012) Akshaya Ramesh et al.   MOLECULAR AND BIOCHEMICAL PARASITOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Harnessing genomics and genome biology to understand malaria biology

(2012) Sarah K. Volkman et al.   NATURE REVIEWS GENETICS

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

Inference of human population history from individual whole-genome sequences

(2011) Heng Li et al.   NATURE

Mugsy: fast multiple alignment of closely related whole genomes

(2010) Samuel V. Angiuoli et al.   BIOINFORMATICS

Robust relationship inference in genome-wide association studies

(2010) Ani Manichaikul et al.   BIOINFORMATICS

phangorn: phylogenetic analysis in R

(2010) Klaus Peter Schliep   BIOINFORMATICS

Applying evolutionary genetics to schistosome epidemiology

(2010) Michelle L. Steinauer et al.   INFECTION GENETICS AND EVOLUTION

Linkage Disequilibrium Between Loci With Unknown Phase

(2009) A. R. Rogers et al.   GENETICS

A genome-wide view of Caenorhabditis elegans base-substitution mutation processes

(2009) D. R. Denver et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Assessing the Impact of a Missed Mass Drug Administration in Haiti

(2009) Kimberly Y. Won et al.   PLoS Neglected Tropical Diseases

Genetics of Mating and Sex Determination in the Parasitic Nematode Haemonchus contortus

(2008) E. Redman et al.   GENETICS

Fast and flexible simulation of DNA sequence data

(2008) G. K. Chen et al.   GENOME RESEARCH

Genetic heterogeneity of Wuchereria bancrofti populations at spatially hierarchical levels in Pondicherry and surrounding areas, south India

(2008) S.L. Hoti et al.   INFECTION GENETICS AND EVOLUTION

The genome of Brugia malayi — All worms are not created equal

(2008) Alan L. Scott et al.   PARASITOLOGY INTERNATIONAL