Transcriptomes of Plant Gametophytes Have a Higher Proportion of Rapidly Evolving and Young Genes than Sporophytes

Evidence for Active Maintenance of Phylotranscriptomic Hourglass Patterns in Animal and Plant Embryogenesis

(2015) Hajk-Georg Drost et al.   MOLECULAR BIOLOGY AND EVOLUTION

Sexual Dimorphism and the Evolution of Sex-Biased Gene Expression in the Brown Alga Ectocarpus

(2015) Agnieszka Lipinska et al.   MOLECULAR BIOLOGY AND EVOLUTION

Young Genes out of the Male: An Insight from Evolutionary Age Analysis of the Pollen Transcriptome

(2015) Xiao Cui et al.   Molecular Plant

The origins of reproductive isolation in plants

(2015) Eric Baack et al.   NEW PHYTOLOGIST

Highly Variable Recombinational Landscape Modulates Efficacy of Natural Selection in Birds

(2014) Toni I. Gossmann et al.   Genome Biology and Evolution

Efficient Purging of Deleterious Mutations in Plants with Haploid Selfing

(2014) Péter Szövényi et al.   Genome Biology and Evolution

A reference genome for common bean and genome-wide analysis of dual domestications

(2014) Jeremy Schmutz et al.   NATURE GENETICS

Comparative Evolutionary and Developmental Dynamics of the Cotton (Gossypium hirsutum) Fiber Transcriptome

(2014) Mi-Jeong Yoo et al.   PLoS Genetics

Genome-wide transcriptomic analysis of the sporophyte of the moss Physcomitrella patens

(2013) Martin-Timothy O’Donoghue et al.   JOURNAL OF EXPERIMENTAL BOTANY

Pollen-Specific, but Not Sperm-Specific, Genes Show Stronger Purifying Selection and Higher Rates of Positive Selection Than Sporophytic Genes in Capsella grandiflora

(2013) Ramesh Arunkumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Selection-Driven Evolution of Sex-Biased Genes Is Consistent with Sexual Selection in Arabidopsis thaliana

(2013) Toni I. Gossmann et al.   MOLECULAR BIOLOGY AND EVOLUTION

The evolutionary causes and consequences of sex-biased gene expression

(2013) John Parsch et al.   NATURE REVIEWS GENETICS

Evolutionary consequences of self-fertilization in plants

(2013) S. I. Wright et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The Hourglass and the Early Conservation Models—Co-Existing Patterns of Developmental Constraints in Vertebrates

(2013) Barbara Piasecka et al.   PLoS Genetics

Evolutionary Rate and Duplicability in the Arabidopsis thaliana Protein–Protein Interaction Network

(2012) David Alvarez-Ponce et al.   Genome Biology and Evolution

A transcriptomic hourglass in plant embryogenesis

(2012) Marcel Quint et al.   NATURE

PGDD: a database of gene and genome duplication in plants

(2012) Tae-Ho Lee et al.   NUCLEIC ACIDS RESEARCH

NCBI GEO: archive for functional genomics data sets—update

(2012) Tanya Barrett et al.   NUCLEIC ACIDS RESEARCH

A Powerful Method for Transcriptional Profiling of Specific Cell Types in Eukaryotes: Laser-Assisted Microdissection and RNA Sequencing

(2012) Marc W. Schmid et al.   PLoS One

Genome-wide transcriptome analysis of gametophyte development in Physcomitrella patens

(2011) Lihong Xiao et al.   BMC PLANT BIOLOGY

Genomic Determinants of Protein Evolution and Polymorphism in Arabidopsis

(2011) Tanja Slotte et al.   Genome Biology and Evolution

Global Analysis of Expression Profiles of Rice Receptor-Like Kinase Genes

(2011) Lin-Lin Gao et al.   Molecular Plant

The Arabidopsis lyrata genome sequence and the basis of rapid genome size change

(2011) Tina T Hu et al.   NATURE GENETICS

Whole-genome sequencing of multiple Arabidopsis thaliana populations

(2011) Jun Cao et al.   NATURE GENETICS

PLEXdb: gene expression resources for plants and plant pathogens

(2011) S. Dash et al.   NUCLEIC ACIDS RESEARCH

Plant germline development: a tale of cross-talk, signaling, and cellular interactions

(2011) Ueli Grossniklaus   SEXUAL PLANT REPRODUCTION

Transcriptome Analysis of the Arabidopsis Megaspore Mother Cell Uncovers the Importance of RNA Helicases for Plant Germline Development

(2011) Anja Schmidt et al.   PLOS BIOLOGY

Gene expression in developing fibres of Upland cotton (Gossypium hirsutum L.) was massively altered by domestication

(2010) Ryan A Rapp et al.   BMC BIOLOGY

Genome-scale analysis and comparison of gene expression profiles in developing and germinated pollen in Oryza sativa

(2010) Li Q Wei et al.   BMC GENOMICS

Arabidopsis Female Gametophyte Gene Expression Map Reveals Similarities between Plant and Animal Gametes

(2010) Samuel E. Wuest et al.   CURRENT BIOLOGY

Genome Wide Analyses Reveal Little Evidence for Adaptive Evolution in Many Plant Species

(2010) T. I. Gossmann et al.   MOLECULAR BIOLOGY AND EVOLUTION

Estimation of the Neutrality Index

(2010) N. Stoletzki et al.   MOLECULAR BIOLOGY AND EVOLUTION

Gene expression divergence recapitulates the developmental hourglass model

(2010) Alex T. Kalinka et al.   NATURE

A phylogenetically based transcriptome age index mirrors ontogenetic divergence patterns

(2010) Tomislav Domazet-Lošo et al.   NATURE

Genome sequence of the palaeopolyploid soybean

(2010) Jeremy Schmutz et al.   NATURE

Rice Expression Atlas In Reproductive Development

(2010) Masahiro Fujita et al.   PLANT AND CELL PHYSIOLOGY

The Seed Composition of Arabidopsis Mutants for the Group 3 Sulfate Transporters Indicates a Role in Sulfate Translocation within Developing Seeds

(2010) H. Zuber et al.   PLANT PHYSIOLOGY

Probing the Reproducibility of Leaf Growth and Molecular Phenotypes: A Comparison of Three Arabidopsis Accessions Cultivated in Ten Laboratories

(2010) C. Massonnet et al.   PLANT PHYSIOLOGY

Global analysis of gene activity during Arabidopsis seed development and identification of seed-specific transcription factors

(2010) B. H. Le et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Local-Scale Patterns of Genetic Variability, Outcrossing, and Spatial Structure in Natural Stands of Arabidopsis thaliana

(2010) Kirsten Bomblies et al.   PLoS Genetics

Genomic expression profiling of mature soybean (Glycine max) pollen

(2009) Farzad Haerizadeh et al.   BMC PLANT BIOLOGY

The Sorghum bicolor genome and the diversification of grasses

(2009) Andrew H. Paterson et al.   NATURE

InParanoid 7: new algorithms and tools for eukaryotic orthology analysis

(2009) G. Ostlund et al.   NUCLEIC ACIDS RESEARCH

Comparative Transcriptomics of Arabidopsis Sperm Cells

(2008) F. Borges et al.   PLANT PHYSIOLOGY

Transcriptome Analyses Show Changes in Gene Expression to Accompany Pollen Germination and Tube Growth in Arabidopsis

(2008) Y. Wang et al.   PLANT PHYSIOLOGY