Common Structural Core of Three-Dozen Residues Reveals Intersuperfamily Relationships

Is Sequence Alignment an Art or a Science?

(2015) David A. Morrison   SYSTEMATIC BOTANY

Automated Structural Comparisons Clarify the Phylogeny of the Right-Hand-Shaped Polymerases

(2014) Heli A. M. Mönttinen et al.   MOLECULAR BIOLOGY AND EVOLUTION

A highly divergent archaeo-eukaryotic primase from the Thermococcus nautilus plasmid, pTN2

(2014) Sukhvinder Gill et al.   NUCLEIC ACIDS RESEARCH

A series of PDB-related databanks for everyday needs

(2014) Wouter G. Touw et al.   NUCLEIC ACIDS RESEARCH

ECOD: An Evolutionary Classification of Protein Domains

(2014) Hua Cheng et al.   PLoS Computational Biology

Automatic comparison and classification of protein structures

(2013) Janne Ravantti et al.   JOURNAL OF STRUCTURAL BIOLOGY

Breaking and joining single-stranded DNA: the HUH endonuclease superfamily

(2013) Michael Chandler et al.   NATURE REVIEWS MICROBIOLOGY

SCOP2 prototype: a new approach to protein structure mining

(2013) Antonina Andreeva et al.   NUCLEIC ACIDS RESEARCH

Adding unaligned sequences into an existing alignment using MAFFT and LAST

(2012) Kazutaka Katoh et al.   BIOINFORMATICS

CD-HIT: accelerated for clustering the next-generation sequencing data

(2012) Limin Fu et al.   BIOINFORMATICS

Crystal structure of Cmr2 suggests a nucleotide cyclase-related enzyme in type III CRISPR-Cas systems

(2012) Xing Zhu et al.   FEBS LETTERS

Cas Protein Cmr2 Full of Surprises

(2012) Raven H. Huang   STRUCTURE

Structure of the Cmr2 Subunit of the CRISPR-Cas RNA Silencing Complex

(2012) Alexis I. Cocozaki et al.   STRUCTURE

Dendroscope 3: An Interactive Tool for Rooted Phylogenetic Trees and Networks

(2012) Daniel H. Huson et al.   SYSTEMATIC BIOLOGY

Unification of Cas protein families and a simple scenario for the origin and evolution of CRISPR-Cas systems

(2011) Kira S Makarova et al.   Biology Direct

A widespread class of reverse transcriptase-related cellular genes

(2011) E. A. Gladyshev et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

How significant is a protein structure similarity with TM-score = 0.5?

(2010) Jinrui Xu et al.   BIOINFORMATICS

Presence of a classical RRM-fold palm domain in Thg1-type 3'- 5'nucleic acid polymerases and the origin of the GGDEF and CRISPR polymerase domains

(2010) Vivek Anantharaman et al.   Biology Direct

Dali server: conservation mapping in 3D

(2010) Liisa Holm et al.   NUCLEIC ACIDS RESEARCH

tRNAHis guanylyltransferase (THG1), a unique 3'-5' nucleotidyl transferase, shares unexpected structural homology with canonical 5'-3' DNA polymerases

(2010) S. J. Hyde et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

ALINE: a WYSIWYG protein-sequence alignment editor for publication-quality alignments

(2009) Charles Simon Bond et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Molecular modeling and functional characterization of the monomeric primase-polymerase domain from the Sulfolobus solfataricus plasmid pIT3

(2008) Santina Prato et al.   FEBS Journal

PROMALS3D: a tool for multiple protein sequence and structure alignments

(2008) Jimin Pei et al.   NUCLEIC ACIDS RESEARCH

A New Use for a Familiar Fold:  The X-ray Crystal Structure of GTP-Bound GTP Cyclohydrolase III fromMethanocaldococcus jannaschiiReveals a Two Metal Ion Catalytic Mechanism†,‡

(2007) Shane D. Morrison et al.   BIOCHEMISTRY