The genome-wide meiotic recombination landscape in ciliates and its implications for crossover regulation and genome evolution

iGDP: An integrated genome decontamination pipeline for wild ciliated microeukaryotes

(2023) Chuanqi Jiang et al.   Molecular Ecology Resources

Absolute quantification of chromosome copy numbers in the polyploid macronucleus of Tetrahymena thermophila at the single‐cell level

(2022) Yuanyuan Zhou et al.   JOURNAL OF EUKARYOTIC MICROBIOLOGY

Diversity and determinants of recombination landscapes in flowering plants

(2022) Thomas Brazier et al.   PLoS Genetics

Selective utilization of non‐homologous end‐joining and homologous recombination for DNA repair during meiotic maturation in mouse oocytes

(2022) Crystal Lee et al.   CELL PROLIFERATION

Landscape of meiotic crossovers in Hericium erinaceus

(2021) Wenbing Gong et al.   MICROBIOLOGICAL RESEARCH

Diffusion-mediated HEI10 coarsening can explain meiotic crossover positioning in Arabidopsis

(2021) Chris Morgan et al.   Nature Communications

Transposon debris in ciliate genomes

(2021) Yi Feng et al.   PLOS BIOLOGY

TBtools: An Integrative Toolkit Developed for Interactive Analyses of Big Biological Data

(2020) Chengjie Chen et al.   Molecular Plant

Drivers of mating type composition in Tetrahymena thermophila

(2020) Guangying Wang et al.   Genome Biology and Evolution

Single gametophyte sequencing reveals that crossover events differ between sexes in maize

(2019) Cheng Luo et al.   Nature Communications

RNAi-dependent Polycomb repression controls transposable elements in Tetrahymena

(2019) Xiaolu Zhao et al.   GENES & DEVELOPMENT

Hidden genomic evolution in a morphospecies—The landscape of rapidly evolving genes in Tetrahymena

(2019) Jie Xiong et al.   PLOS BIOLOGY

Crossover Interference: Shedding Light on the Evolution of Recombination

(2019) Sarah P. Otto et al.   Annual Review of Genetics

Diverse DNA Sequence Motifs Activate Meiotic Recombination Hotspots Through a Common Chromatin Remodeling Pathway

(2019) Tresor O. Mukiza et al.   GENETICS

The dmc1 Mutant Allows an Insight Into the DNA Double-Strand Break Repair During Meiosis in Barley (Hordeum vulgare L.)

(2019) Miriam Szurman-Zubrzycka et al.   Frontiers in Plant Science

A high-resolution map of non-crossover events reveals impacts of genetic diversity on mammalian meiotic recombination

(2019) Ran Li et al.   Nature Communications

OUP accepted manuscript

(2018)   BIOINFORMATICS

1000 human genomes carry widespread signatures of GC biased gene conversion

(2018) Rajib Dutta et al.   BMC GENOMICS

Mechanistic View and Genetic Control of DNA Recombination during Meiosis

(2018) Marie-Claude Marsolier-Kergoat et al.   MOLECULAR CELL

Biased inference of selection due to GC-biased gene conversion and the rate of protein evolution in flycatchers when accounting for it

(2018) Paulina Bolívar et al.   MOLECULAR BIOLOGY AND EVOLUTION

High-resolution insight into recombination events at the SD1 locus in rice

(2018) Xianqing Jia et al.   PLANT JOURNAL

Structural Variation Shapes the Landscape of Recombination in Mouse

(2017) Andrew P. Morgan et al.   GENETICS

A Zip3-like protein plays a role in crossover formation in the SC-less meiosis of the protist Tetrahymena

(2017) Anura Shodhan et al.   MOLECULAR BIOLOGY OF THE CELL

Variation in recombination frequency and distribution across eukaryotes: patterns and processes

(2017) Jessica Stapley et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Coevolution between transposable elements and recombination

(2017) Tyler V. Kent et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Understanding and Manipulating Meiotic Recombination in Plants

(2017) Christophe Lambing et al.   PLANT PHYSIOLOGY

Variation of the meiotic recombination landscape and properties over a broad evolutionary distance in yeasts

(2017) Christian Brion et al.   PLoS Genetics

Structural Variation Shapes the Landscape of Recombination in Mouse

(2017) Andrew P. Morgan et al.   GENETICS

The Role of the Core Non-Homologous End Joining Factors in Carcinogenesis and Cancer

(2017) et al.   Cancers

Tetrad analysis in plants and fungi finds large differences in gene conversion rates but no GC bias

(2017) Haoxuan Liu et al.   Nature Ecology & Evolution

Meiotic recombination and genome evolution in plants

(2016) Cathy Melamed-Bessudo et al.   CURRENT OPINION IN PLANT BIOLOGY

Tetrahymena as a Unicellular Model Eukaryote: Genetic and Genomic Tools

(2016) Marisa D. Ruehle et al.   GENETICS

DNA double-strand break formation and repair in Tetrahymena meiosis

(2016) Josef Loidl et al.   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

High-Resolution Mapping of Crossover and Non-crossover Recombination Events by Whole-Genome Re-sequencing of an Avian Pedigree

(2016) Linnéa Smeds et al.   PLoS Genetics

Structure of the germline genome of Tetrahymena thermophila and relationship to the massively rearranged somatic genome

(2016) Eileen P Hamilton et al.   eLife

Tetrahymena as a Unicellular Model Eukaryote: Genetic and Genomic Tools

(2016) Marisa D. Ruehle et al.   GENETICS

The relationship of recombination rate, genome structure, and patterns of molecular evolution across angiosperms

(2015) George P. Tiley et al.   BMC EVOLUTIONARY BIOLOGY

The Impact of Recombination Hotspots on Genome Evolution of a Fungal Plant Pathogen

(2015) D. Croll et al.   GENETICS

Genome-wide maps of recombination and chromosome segregation in human oocytes and embryos show selection for maternal recombination rates

(2015) Christian S Ottolini et al.   NATURE GENETICS

Widely distributed hot and cold spots in meiotic recombination as shown by the sequencing of rice F2plants

(2015) Weina Si et al.   NEW PHYTOLOGIST

Dissecting meiotic recombination based on tetrad analysis by single-microspore sequencing in maize

(2015) Xiang Li et al.   Nature Communications

Causes and consequences of crossing-over evidenced via a high-resolution recombinational landscape of the honey bee

(2015) Haoxuan Liu et al.   GENOME BIOLOGY

Msh4 and Msh5 Function in SC-Independent Chiasma Formation During the Streamlined Meiosis of Tetrahymena

(2014) A. Shodhan et al.   GENETICS

Down-Regulation of Rad51 Activity during Meiosis in Yeast Prevents Competition with Dmc1 for Repair of Double-Strand Breaks

(2014) Yan Liu et al.   PLoS Genetics

Meiosis Gene Inventory of Four Ciliates Reveals the Prevalence of a Synaptonemal Complex-Independent Crossover Pathway

(2013) Jingyun Chi et al.   MOLECULAR BIOLOGY AND EVOLUTION

Meiotic chromosome structures constrain and respond to designation of crossover sites

(2013) Diana E. Libuda et al.   NATURE

Arabidopsis meiotic crossover hot spots overlap with H2A.Z nucleosomes at gene promoters

(2013) Kyuha Choi et al.   NATURE GENETICS

Genetic recombination is directed away from functional genomic elements in mice

(2012) Kevin Brick et al.   NATURE

Great majority of recombination events in Arabidopsis are gene conversion events

(2012) S. Yang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Many Landscapes of Recombination in Drosophila melanogaster

(2012) Josep M. Comeron et al.   PLoS Genetics

A Hierarchical Combination of Factors Shapes the Genome-wide Topography of Yeast Meiotic Recombination Initiation

(2011) Jing Pan et al.   CELL

Analysis of Arabidopsis genome-wide variations before and after meiosis and meiotic recombination by resequencing Landsberg erecta and all four products of a single meiosis

(2011) P. Lu et al.   GENOME RESEARCH

The making of a new pathogen: Insights from comparative population genomics of the domesticated wheat pathogen Mycosphaerella graminicola and its wild sister species

(2011) E. H. Stukenbrock et al.   GENOME RESEARCH

Genome-wide analysis reveals novel molecular features of mouse recombination hotspots

(2011) Fatima Smagulova et al.   NATURE

Tetrahymena thermophila, a unicellular eukaryote with separate germline and somatic genomes

(2011) Eduardo Orias et al.   RESEARCH IN MICROBIOLOGY

High recombination rates and hotspots in a Plasmodium falciparum genetic cross

(2011) Hongying Jiang et al.   GENOME BIOLOGY

maxLik: A package for maximum likelihood estimation in R

(2010) Arne Henningsen et al.   COMPUTATIONAL STATISTICS

Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities

(2010) Sven Heinz et al.   MOLECULAR CELL

Patterns of Recombination Activity on Mouse Chromosome 11 Revealed by High Resolution Mapping

(2010) Timothy Billings et al.   PLoS One

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Two-parameter characterization of chromosome-scale recombination rate

(2009) W. Li et al.   GENOME RESEARCH

High-resolution mapping of meiotic crossovers and non-crossovers in yeast

(2008) Eugenio Mancera et al.   NATURE