Hidden genomic evolution in a morphospecies—The landscape of rapidly evolving genes in Tetrahymena

“Twisted Tales: Insights into Genome Diversity of Ciliates Using Single-Cell ‘omics”

(2018) Xyrus X Maurer-Alcalá et al.   Genome Biology and Evolution

Cryptic species as a window into the paradigm shift of the species concept

(2018) Cene Fišer et al.   MOLECULAR ECOLOGY

Finding Evolutionary Processes Hidden in Cryptic Species

(2018) Torsten H. Struck et al.   TRENDS IN ECOLOGY & EVOLUTION

Tandem Repeats Contribute to Coding Sequence Variation in Bumblebees (Hymenoptera: Apidae)

(2018) Xiaomeng Zhao et al.   Genome Biology and Evolution

Insights into the origin and evolution of Peritrichia (Oligohymenophorea, Ciliophora) based on analyses of morphology and phylogenomics

(2018) Chuan-Qi Jiang et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Genetic Analysis of NBS-LRR Gene Family in Chickpea and Their Expression Profiles in Response to Ascochyta Blight Infection

(2017) Mandeep S. Sagi et al.   Frontiers in Plant Science

Distribution and population genetic variation of cryptic species of the Alpine mayfly Baetis alpinus (Ephemeroptera: Baetidae) in the Central Alps

(2016) Marie Leys et al.   BMC EVOLUTIONARY BIOLOGY

Ingestion and digestion studies in Tetrahymena pyriformis based on chemically modified microparticles

(2016) Hendrike Dürichen et al.   EUROPEAN JOURNAL OF PROTISTOLOGY

Tetrahymena as a Unicellular Model Eukaryote: Genetic and Genomic Tools

(2016) Marisa D. Ruehle et al.   GENETICS

In Memoriam: David L. Nanney (1925-2016)

(2016) F. Paul Doerder et al.   JOURNAL OF EUKARYOTIC MICROBIOLOGY

The Diversification of PlantNBS-LRRDefense Genes Directs the Evolution of MicroRNAs That Target Them

(2016) Yu Zhang et al.   MOLECULAR BIOLOGY AND EVOLUTION

Structure of the germline genome of Tetrahymena thermophila and relationship to the massively rearranged somatic genome

(2016) Eileen P Hamilton et al.   eLife

Tetrahymena as a Unicellular Model Eukaryote: Genetic and Genomic Tools

(2016) Marisa D. Ruehle et al.   GENETICS

Uncertainty in the Timing of Origin of Animals and the Limits of Precision in Molecular Timescales

(2015) Mario dos Reis et al.   CURRENT BIOLOGY

Dinoflagellate Gene Structure and Intron Splice Sites in a Genomic Tandem Array

(2015) Gregory S. Mendez et al.   JOURNAL OF EUKARYOTIC MICROBIOLOGY

Genome-Wide Identification and Expression Analysis of NBS-Encoding Genes in Malus x domestica and Expansion of NBS Genes Family in Rosaceae

(2014) Preeti Arya et al.   PLoS One

Novel Leucine Rich Repeat Domains in Proteins from Unicellular Eukaryotes and Bacteria

(2014) Hiroki Miyashita et al.   PROTEIN AND PEPTIDE LETTERS

Heterogeneous Rates of Molecular Evolution Among Cryptic Species of the Ciliate Morphospecies Chilodonella uncinata

(2012) Laura A. Katz et al.   JOURNAL OF MOLECULAR EVOLUTION

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

SSU rRNA gene variation resolves population heterogeneity and ecophysiological differentiation within a morphospecies (Stramenopiles,Chrysophyceae)

(2011) Karin Pfandl et al.   LIMNOLOGY AND OCEANOGRAPHY

Highly Dynamic Exon Shuffling in Candidate Pathogen Receptors ... What if Brown Algae Were Capable of Adaptive Immunity?

(2011) A. Zambounis et al.   MOLECULAR BIOLOGY AND EVOLUTION

Large genomic differences between the morphologically indistinguishable diplomonads Spironucleus barkhanus and Spironucleus salmonicida

(2010) Katarina Roxström-Lindquist et al.   BMC GENOMICS

CRISPR/Cas, the Immune System of Bacteria and Archaea

(2010) P. Horvath et al.   SCIENCE

High-Level Genetic Diversity but No Population Structure Inferred from Nuclear and Mitochondrial Markers of the Peritrichous Ciliate Carchesium polypinum in the Grand River Basin (North America)

(2009) E. Gentekaki et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

DDX11L: a novel transcript family emerging from human subtelomeric regions

(2009) Valerio Costa et al.   BMC GENOMICS

De novo assembly of human genomes with massively parallel short read sequencing

(2009) R. Li et al.   GENOME RESEARCH

EVOLUTION FROM FISH TO MAMMALS BY GENE DUPLICATION

(2009) SUSUMU OHNO et al.   HEREDITAS

The leucine-rich repeat domain in plant innate immunity: a wealth of possibilities

(2008) Meenu Padmanabhan et al.   CELLULAR MICROBIOLOGY

ALLPATHS: De novo assembly of whole-genome shotgun microreads

(2008) J. Butler et al.   GENOME RESEARCH

Recurrent Tandem Gene Duplication Gave Rise to Functionally Divergent Genes in Drosophila

(2008) C. Fan et al.   MOLECULAR BIOLOGY AND EVOLUTION

Phylogenetic relationships within the genus Tetrahymena inferred from the cytochrome c oxidase subunit 1 and the small subunit ribosomal RNA genes

(2008) C CHANTANGSI et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments

(2008) Brian J Haas et al.   GENOME BIOLOGY