ML-NPI: Predicting Interactions between Noncoding RNA and Protein Based on Meta-Learning in a Large-Scale Dynamic Graph

NSRGRN: a network structure refinement method for gene regulatory network inference

(2023) Wei Liu et al.   BRIEFINGS IN BIOINFORMATICS

HeadTailTransfer: An efficient sampling method to improve the performance of graph neural network method in predicting sparse ncRNA–protein interactions

(2023) Jinhang Wei et al.   COMPUTERS IN BIOLOGY AND MEDICINE

RPI-MDLStack: Predicting RNA–protein interactions through deep learning with stacking strategy and LASSO

(2022) Bin Yu et al.   APPLIED SOFT COMPUTING

GAMB-GNN: Graph Neural Networks learning from gene structure relations and Markov Blanket ranking for cancer classification in microarray data

(2022) Shoujia Zhang et al.   CHEMOMETRICS AND INTELLIGENT LABORATORY SYSTEMS

LNCcation: lncRNA localization and function

(2021) Mary Catherine Bridges et al.   JOURNAL OF CELL BIOLOGY

NPI-GNN: Predicting ncRNA–protein interactions with deep graph neural networks

(2021) Zi-Ang Shen et al.   BRIEFINGS IN BIOINFORMATICS

LPI-BLS: Predicting lncRNA–protein interactions with a broad learning system-based stacked ensemble classifier

(2019) Xiao-Nan Fan et al.   NEUROCOMPUTING

Temporal Link Prediction: A Survey

(2019) Aswathy Divakaran et al.   NEW GENERATION COMPUTING

BNPMDA: Bipartite Network Projection for MiRNA–Disease Association prediction

(2018) Xing Chen et al.   BIOINFORMATICS

Screening for lncRNA function

(2017) Linda Koch   NATURE REVIEWS GENETICS

IPMiner: hidden ncRNA-protein interaction sequential pattern mining with stacked autoencoder for accurate computational prediction

(2016) Xiaoyong Pan et al.   BMC GENOMICS

WBSMDA: Within and Between Score for MiRNA-Disease Association prediction

(2016) Xing Chen et al.   Scientific Reports

Predicting the sequence specificities of DNA- and RNA-binding proteins by deep learning

(2015) Babak Alipanahi et al.   NATURE BIOTECHNOLOGY

Rôle des longs ARN non codants dans le développement normal et pathologique

(2014) Ève-Lyne Mathieu et al.   M S-MEDECINE SCIENCES

catRAPID omics: a web server for large-scale prediction of protein-RNA interactions

(2013) F. Agostini et al.   BIOINFORMATICS

Computational prediction of associations between long non-coding RNAs and proteins

(2013) Qiongshi Lu et al.   BMC GENOMICS

Emerging epigenetic mechanisms of long non-coding RNAs

(2013) K. Schaukowitch et al.   NEUROSCIENCE

Function of lncRNAs and approaches to lncRNA-protein interactions

(2013) JuanJuan Zhu et al.   Science China-Life Sciences

De novo prediction of RNA–protein interactions from sequence information

(2012) Ying Wang et al.   Molecular BioSystems

Temporal networks

(2012) Petter Holme et al.   PHYSICS REPORTS-REVIEW SECTION OF PHYSICS LETTERS

Predicting protein associations with long noncoding RNAs

(2011) Matteo Bellucci et al.   NATURE METHODS

Rapid and systematic analysis of the RNA recognition specificities of RNA-binding proteins

(2009) Debashish Ray et al.   NATURE BIOTECHNOLOGY

Cancer micrometastases

(2009) Klaus Pantel et al.   Nature Reviews Clinical Oncology

Long intronic noncoding RNA transcription: Expression noise or expression choice?

(2008) Rodrigo Louro et al.   GENOMICS