HeadTailTransfer: An efficient sampling method to improve the performance of graph neural network method in predicting sparse ncRNA–protein interactions

Protein–DNA/RNA interactions: Machine intelligence tools and approaches in the era of artificial intelligence and big data

(2022) Feifei Cui et al.   PROTEOMICS

Noise-reducing attention cross fusion learning transformer for histological image classification of osteosarcoma

(2022) Liangrui Pan et al.   Biomedical Signal Processing and Control

MinimapR: A parallel alignment tool for the analysis of large-scale third-generation sequencing data

(2022) Zihang Wang et al.   COMPUTATIONAL BIOLOGY AND CHEMISTRY

NPI-GNN: Predicting ncRNA–protein interactions with deep graph neural networks

(2021) Zi-Ang Shen et al.   BRIEFINGS IN BIOINFORMATICS

Imputing single-cell RNA-seq data by combining graph convolution and autoencoder neural networks

(2021) Jiahua Rao et al.   iScience

An $L_0$ Regularization Method for Imaging Genetics and Whole Genome Association Analysis on Alzheimer's Disease

(2021) Xiong Li et al.   IEEE Journal of Biomedical and Health Informatics

StackCPPred: A Stacking and Pairwise Energy Content-based Prediction of Cell-Penetrating Peptides and Their Uptake Efficiency

(2020) Xiangzheng Fu et al.   BIOINFORMATICS

A deep learning model for plant lncRNA-protein interaction prediction with graph attention

(2020) Jael Sanyanda Wekesa et al.   MOLECULAR GENETICS AND GENOMICS

RPITER: A Hierarchical Deep Learning Framework for ncRNA–Protein Interaction Prediction

(2019) Cheng Peng et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

deepDR: A network-based deep learning approach to in silico drug repositioning

(2019) Xiangxiang Zeng et al.   BIOINFORMATICS

LPI-BLS: Predicting lncRNA–protein interactions with a broad learning system-based stacked ensemble classifier

(2019) Xiao-Nan Fan et al.   NEUROCOMPUTING

ncRNA-Encoded Peptides or Proteins and Cancer

(2019) Jizhong Wang et al.   MOLECULAR THERAPY

IPMiner: hidden ncRNA-protein interaction sequential pattern mining with stacked autoencoder for accurate computational prediction

(2016) Xiaoyong Pan et al.   BMC GENOMICS

Silencing of Long Non-Coding RNA NONHSAT009968 Ameliorates the Staphylococcal Protein A-Inhibited Osteogenic Differentiation in Human Bone Mesenchymal Stem Cells

(2016) Yi Cui et al.   CELLULAR PHYSIOLOGY AND BIOCHEMISTRY

Sustainable photosynthetic H 2 -production mediated by artificial miRNA silencing of OEE2 gene in green alga Chlamydomonas reinhardtii

(2015) Hui Li et al.   INTERNATIONAL JOURNAL OF HYDROGEN ENERGY

Pse-in-One: a web server for generating various modes of pseudo components of DNA, RNA, and protein sequences

(2015) Bin Liu et al.   NUCLEIC ACIDS RESEARCH

NPInter v2.0: an updated database of ncRNA interactions

(2013) Jiao Yuan et al.   NUCLEIC ACIDS RESEARCH

Switching cell fate, ncRNAs coming to play

(2013) D Guan et al.   Cell Death & Disease

The non-coding RNA world of the bacterial pathogenListeria monocytogenes

(2012) Jeffery R. Mellin et al.   RNA Biology

Non-coding RNA and antisense RNA. Nature’s trash or treasure?

(2011) Stuart Knowling et al.   BIOCHIMIE

Predicting RNA-Protein Interactions Using Only Sequence Information

(2011) Usha K Muppirala et al.   BMC BIOINFORMATICS

PRIDB: a protein-RNA interface database

(2010) B. A. Lewis et al.   NUCLEIC ACIDS RESEARCH

Rapid and systematic analysis of the RNA recognition specificities of RNA-binding proteins

(2009) Debashish Ray et al.   NATURE BIOTECHNOLOGY

HITS-CLIP yields genome-wide insights into brain alternative RNA processing

(2008) Donny D. Licatalosi et al.   NATURE