Integrated community models: A framework combining multispecies data sources to estimate the status, trends and dynamics of biodiversity

Integrating presence‐only and presence–absence data to model changes in species geographic ranges: An example in the Neotropics

(2023) Florencia Grattarola et al.   JOURNAL OF BIOGEOGRAPHY

Using integrated multispecies occupancy models to map co‐occurrence between bottlenose dolphins and fisheries in the Gulf of Lion, French Mediterranean Sea

(2023) Valentin Lauret et al.   OIKOS

Insect decline in the Anthropocene: Death by a thousand cuts

(2021) David L. Wagner et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A quantitative global review of species population monitoring

(2021) Caroline Moussy et al.   CONSERVATION BIOLOGY

Addressing data integration challenges to link ecological processes across scales

(2021) Elise F Zipkin et al.   FRONTIERS IN ECOLOGY AND THE ENVIRONMENT

Working across space and time: nonstationarity in ecological research and application

(2021) Christine R Rollinson et al.   FRONTIERS IN ECOLOGY AND THE ENVIRONMENT

Fewer butterflies seen by community scientists across the warming and drying landscapes of the American West

(2021) M. L. Forister et al.   SCIENCE

Analytical guidelines to increase the value of community science data: An example using eBird data to estimate species distributions

(2021) Alison Johnston et al.   DIVERSITY AND DISTRIBUTIONS

Multispecies integrated population model reveals bottom‐up dynamics in a seabird predator–prey system

(2021) Maud Quéroué et al.   ECOLOGICAL MONOGRAPHS

Multi‐species occupancy models: review, roadmap, and recommendations

(2020) Kadambari Devarajan et al.   ECOGRAPHY

Interpreting insect declines: seven challenges and a way forward

(2020) Raphael K. Didham et al.   Insect Conservation and Diversity

Tropical snake diversity collapses after widespread amphibian loss

(2020) Elise F. Zipkin et al.   SCIENCE

Is more data always better? A simulation study of benefits and limitations of integrated distribution models

(2020) Emily G. Simmonds et al.   ECOGRAPHY

Integrating distance sampling and presence‐only data to estimate species abundance

(2020) Matthew T. Farr et al.   ECOLOGY

The terrestrial organism and biogeochemistry spatial sampling design for the National Ecological Observatory Network

(2019) David T. Barnett et al.   Ecosphere

Inferring species richness using multispecies occupancy modeling: Estimation performance and interpretation

(2019) Gurutzeta Guillera‐Arroita et al.   Ecology and Evolution

Multiscale seasonal factors drive the size of winter monarch colonies

(2019) Sarah P. Saunders et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Multispecies hierarchical modeling reveals variable responses of African carnivores to management alternatives

(2019) Matthew T. Farr et al.   ECOLOGICAL APPLICATIONS

Using Semistructured Surveys to Improve Citizen Science Data for Monitoring Biodiversity

(2019) Steve Kelling et al.   BIOSCIENCE

Understanding ecological change across large spatial, temporal and taxonomic scales: integrating data and methods in light of theory

(2019) Giovanni Rapacciuolo et al.   ECOGRAPHY

Innovations in data integration for modeling populations

(2019) Elise F. Zipkin et al.   ECOLOGY

Resolving misaligned spatial data with integrated species distribution models

(2019) Krishna Pacifici et al.   ECOLOGY

A practical guide for combining data to model species distributions

(2019) Robert J. Fletcher et al.   ECOLOGY

Disentangling data discrepancies with integrated population models

(2019) Sarah P. Saunders et al.   ECOLOGY

Integrated population models: powerful methods to embed individual processes in population dynamics models

(2019) Floriane Plard et al.   ECOLOGY

Butterfly abundance declines over 20 years of systematic monitoring in Ohio, USA

(2019) Tyson Wepprich et al.   PLoS One

Tracking trends in monarch abundance over the 20th century is currently impossible using museum records

(2019) Leslie Ries et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Integrating multiple data sources to fit matrix population models for interacting species

(2019) Frédéric Barraquand et al.   ECOLOGICAL MODELLING

Data Integration for Large-Scale Models of Species Distributions

(2019) Nick J.B. Isaac et al.   TRENDS IN ECOLOGY & EVOLUTION

Synthesizing multiple data types for biological conservation using integrated population models

(2018) Elise F. Zipkin et al.   BIOLOGICAL CONSERVATION

Overcoming the Data Crisis in Biodiversity Conservation

(2018) Holly K. Kindsvater et al.   TRENDS IN ECOLOGY & EVOLUTION

A spatially explicit hierarchical model to characterize population viability

(2018) Steven P. Campbell et al.   ECOLOGICAL APPLICATIONS

Programming With Models: Writing Statistical Algorithms for General Model Structures With NIMBLE

(2017) Perry de Valpine et al.   JOURNAL OF COMPUTATIONAL AND GRAPHICAL STATISTICS

brms: An R Package for Bayesian Multilevel Models Using Stan

(2017) Paul-Christian Bürkner   Journal of Statistical Software

Dynamic spatio-temporal models for spatial data

(2017) Trevor J. Hefley et al.   Spatial Statistics

More than 75 percent decline over 27 years in total flying insect biomass in protected areas

(2017) Caspar A. Hallmann et al.   PLoS One

The Citizen Science Opportunity for Researchers and Agencies

(2016) Ian Thornhill et al.   BIOSCIENCE

Modelling of species distributions, range dynamics and communities under imperfect detection: advances, challenges and opportunities

(2016) Gurutzeta Guillera-Arroita   ECOGRAPHY

Joint dynamic species distribution models: a tool for community ordination and spatio-temporal monitoring

(2016) James T. Thorson et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Insights into processes of population decline using an integrated population model: The case of the St. Lawrence Estuary beluga (Delphinapterus leucas)

(2015) A. Mosnier et al.   ECOLOGICAL MODELLING

Habitat suitability modelling of rare species using Bayesian networks: Model evaluation under limited data

(2015) Serena H. Hamilton et al.   ECOLOGICAL MODELLING

An integrated population model for a long-lived ungulate: more efficient data use with Bayesian methods

(2015) Aline M. Lee et al.   OIKOS

So Many Variables: Joint Modeling in Community Ecology

(2015) David I. Warton et al.   TRENDS IN ECOLOGY & EVOLUTION

Accounting for imperfect detection and survey bias in statistical analysis of presence-only data

(2014) Robert M. Dorazio   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Detecting diversity: emerging methods to estimate species diversity

(2013) Kelly J. Iknayan et al.   TRENDS IN ECOLOGY & EVOLUTION

A Hierarchical Bayesian Approach to Ecological Count Data: A Flexible Tool for Ecologists

(2011) James A. Fordyce et al.   PLoS One

Overcoming the rare species modelling paradox: A novel hierarchical framework applied to an Iberian endemic plant

(2010) A. Lomba et al.   BIOLOGICAL CONSERVATION

Integrated population models: a novel analysis framework for deeper insights into population dynamics

(2010) Michael Schaub et al.   JOURNAL OF ORNITHOLOGY

eBird: A citizen-based bird observation network in the biological sciences

(2009) Brian L. Sullivan et al.   BIOLOGICAL CONSERVATION

Multi-species occurrence models to evaluate the effects of conservation and management actions

(2009) Elise F. Zipkin et al.   BIOLOGICAL CONSERVATION