Spitting in the wind?—The challenges of RNA sequencing for biomarker discovery from saliva
Published 2023 View Full Article
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Title
Spitting in the wind?—The challenges of RNA sequencing for biomarker discovery from saliva
Authors
Keywords
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Journal
INTERNATIONAL JOURNAL OF LEGAL MEDICINE
Volume -, Issue -, Pages -
Publisher
Springer Science and Business Media LLC
Online
2023-10-17
DOI
10.1007/s00414-023-03100-3
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Note: Only part of the references are listed.- TrACES of time: Transcriptomic analyses for the contextualization of evidential stains – Identification of RNA markers for estimating time-of-day of bloodstain deposition
- (2023) A. Gosch et al. Forensic Science International-Genetics
- The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update
- (2022) et al. NUCLEIC ACIDS RESEARCH
- sRNAbench and sRNAtoolbox 2022 update: accurate miRNA and sncRNA profiling for model and non-model organisms
- (2022) Ernesto Aparicio-Puerta et al. NUCLEIC ACIDS RESEARCH
- Best of both: A simultaneous analysis of mRNA and miRNA markers for body fluid identification
- (2022) Malte Bamberg et al. Forensic Science International-Genetics
- Epigenetic age estimation in saliva and in buccal cells
- (2022) A. Ambroa-Conde et al. Forensic Science International-Genetics
- Metagenome analysis using the Kraken software suite
- (2022) Jennifer Lu et al. Nature Protocols
- A Comprehensive Characterization of Small RNA Profiles by Massively Parallel Sequencing in Six Forensic Body Fluids/Tissue
- (2022) Zhiyong Liu et al. Genes
- Confounding Factors Impacting microRNA Expression in Human Saliva: Methodological and Biological Considerations
- (2022) Rhea Sullivan et al. Genes
- Longitudinal saliva omics responses to immune perturbation: a case study
- (2021) George I. Mias et al. Scientific Reports
- Technical Considerations and Protocol Optimization for Neonatal Salivary Biomarker Discovery and Analysis
- (2021) Elizabeth Yen et al. Frontiers in Pediatrics
- Forensic transcriptome analysis using massively parallel sequencing
- (2021) Cordula Haas et al. Forensic Science International-Genetics
- Quality control in scRNA-Seq can discriminate pacemaker cells: the mtRNA bias
- (2021) Anne-Marie Galow et al. CELLULAR AND MOLECULAR LIFE SCIENCES
- Degradation of human mRNA transcripts over time as an indicator of the time since deposition (TsD) in biological crime scene traces
- (2021) Andrea Patrizia Salzmann et al. Forensic Science International-Genetics
- Assessing time dependent changes in microbial composition of biological crime scene traces using microbial RNA markers
- (2021) Andrea Patrizia Salzmann et al. Forensic Science International-Genetics
- Estimating the Time Since Deposition of Saliva Stains With a Targeted Bacterial DNA Approach: A Proof-of-Principle Study
- (2021) Celia Díez López et al. Frontiers in Microbiology
- Overcoming challenges in human saliva gene expression measurements
- (2020) Patrick Ostheim et al. Scientific Reports
- Current Methods for Body Fluid Identification Related to Sexual Crime: Focusing on Saliva, Semen, and Vaginal Fluid
- (2020) Koichi Sakurada et al. Diagnostics
- mRNA profiling of mock casework samples: Results of a FoRNAP collaborative exercise
- (2020) Andrea Patrizia Salzmann et al. Forensic Science International-Genetics
- GENCODE 2021
- (2020) Adam Frankish et al. NUCLEIC ACIDS RESEARCH
- MicroRNAs: An Update of Applications in Forensic Science
- (2020) Anna Rocchi et al. Diagnostics
- The stability and persistence of blood and semen mRNA and miRNA targets for body fluid identification in environmentally challenged and laundered samples
- (2019) Carrie Mayes et al. Legal Medicine
- Ribosomal DNA harbors an evolutionarily conserved clock of biological aging
- (2019) Meng Wang et al. GENOME RESEARCH
- Estimating time since deposition using quantification of RNA degradation in body fluid-specific markers
- (2019) Suaad Alshehhi et al. FORENSIC SCIENCE INTERNATIONAL
- Predicting the origin of stains from whole miRNome massively parallel sequencing data
- (2019) Guro Dørum et al. Forensic Science International-Genetics
- sRNAbench and sRNAtoolbox 2019: intuitive fast small RNA profiling and differential expression
- (2019) Ernesto Aparicio-Puerta et al. NUCLEIC ACIDS RESEARCH
- Analysis of RNA in the estimation of post-mortem interval: a review of current evidence
- (2019) Salvatore Scrivano et al. INTERNATIONAL JOURNAL OF LEGAL MEDICINE
- Expression profile analysis of piwi-interacting RNA in forensically relevant biological fluids
- (2019) Shouyu Wang et al. Forensic Science International-Genetics
- Transcription and microbial profiling of body fluids using a massively parallel sequencing approach
- (2019) Andrea Patrizia Salzmann et al. Forensic Science International-Genetics
- Potential applications of microRNA profiling to forensic investigations
- (2019) Claire L. Glynn RNA
- A Beginner's Guide to Analysis of RNA-seq Data
- (2018) Clarissa M Koch et al. AMERICAN JOURNAL OF RESPIRATORY CELL AND MOLECULAR BIOLOGY
- Insights into the human oral microbiome
- (2018) Digvijay Verma et al. ARCHIVES OF MICROBIOLOGY
- Characterization of Human Salivary Extracellular RNA by Next-generation Sequencing
- (2018) Feng Li et al. CLINICAL CHEMISTRY
- Predicting the origin of stains from next generation sequencing mRNA data
- (2018) Guro Dørum et al. Forensic Science International-Genetics
- Quantitation of the cellular content of saliva and buccal swab samples
- (2018) Christiane Theda et al. Scientific Reports
- Evaluation of two main RNA-seq approaches for gene quantification in clinical RNA sequencing: polyA+ selection versus rRNA depletion
- (2018) Shanrong Zhao et al. Scientific Reports
- Total Extracellular Small RNA Profiles from Plasma, Saliva and Urine of Healthy Subjects
- (2017) Ashish Yeri et al. Scientific Reports
- Measure transcript integrity using RNA-seq data
- (2016) Liguo Wang et al. BMC BIOINFORMATICS
- Simultaneous time course analysis of multiple markers based on DNA microarray in incised wound in skeletal muscle for wound aging
- (2016) Mohammed Hassan Gaballah et al. FORENSIC SCIENCE INTERNATIONAL
- Evaluation of mRNA markers for estimating blood deposition time: Towards alibi testing from human forensic stains with rhythmic biomarkers
- (2016) Karolina Lech et al. Forensic Science International-Genetics
- Human age estimation from blood using mRNA, DNA methylation, DNA rearrangement, and telomere length
- (2016) Dmitry Zubakov et al. Forensic Science International-Genetics
- Differentiation of five body fluids from forensic samples by expression analysis of four microRNAs using quantitative PCR
- (2016) Eva Sauer et al. Forensic Science International-Genetics
- A practical guide to the oral microbiome and its relation to health and disease
- (2016) K Krishnan et al. ORAL DISEASES
- Transcriptomic analysis of degraded forensic body fluids
- (2015) Meng-Han Lin et al. Forensic Science International-Genetics
- Orione, a web-based framework for NGS analysis in microbiology
- (2014) Gianmauro Cuccuru et al. BIOINFORMATICS
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- Library preparation methods for next-generation sequencing: Tone down the bias
- (2014) Erwin L. van Dijk et al. EXPERIMENTAL CELL RESEARCH
- Kraken: ultrafast metagenomic sequence classification using exact alignments
- (2014) Derrick E Wood et al. GENOME BIOLOGY
- Ribosomal DNA and cellular senescence: new evidence supporting the connection between rDNA and aging
- (2013) Austen R. D. Ganley et al. FEMS YEAST RESEARCH
- Comparative analysis of RNA sequencing methods for degraded or low-input samples
- (2013) Xian Adiconis et al. NATURE METHODS
- On the origin and diagnostic use of salivary RNA
- (2013) H Fábryová et al. ORAL DISEASES
- SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data
- (2012) Evguenia Kopylova et al. BIOINFORMATICS
- STAR: ultrafast universal RNA-seq aligner
- (2012) Alexander Dobin et al. BIOINFORMATICS
- Enhanced stability of microRNA expression facilitates classification of FFPE tumour samples exhibiting near total mRNA degradation
- (2012) J S Hall et al. BRITISH JOURNAL OF CANCER
- The Human Salivary RNA Transcriptome Revealed by Massively Parallel Sequencing
- (2012) N. Spielmann et al. CLINICAL CHEMISTRY
- A multiplex (m)RNA-profiling system for the forensic identification of body fluids and contact traces
- (2012) Alexander Lindenbergh et al. Forensic Science International-Genetics
- RNA/DNA co-analysis from human saliva and semen stains – Results of a third collaborative EDNAP exercise
- (2012) C. Haas et al. Forensic Science International-Genetics
- Dual RNA-seq of pathogen and host
- (2012) Alexander J. Westermann et al. NATURE REVIEWS MICROBIOLOGY
- Rfam 11.0: 10 years of RNA families
- (2012) Sarah W. Burge et al. NUCLEIC ACIDS RESEARCH
- The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
- (2012) Christian Quast et al. NUCLEIC ACIDS RESEARCH
- The Majority of MicroRNAs Detectable in Serum and Saliva Is Concentrated in Exosomes
- (2012) Alessia Gallo et al. PLoS One
- Selective Depletion of rRNA Enables Whole Transcriptome Profiling of Archival Fixed Tissue
- (2012) John D. Morlan et al. PLoS One
- Interactive metagenomic visualization in a Web browser
- (2011) Brian D Ondov et al. BMC BIOINFORMATICS
- The use of bacteria for the identification of vaginal secretions
- (2010) Rachel I. Fleming et al. Forensic Science International-Genetics
- Using oral microbial DNA analysis to identify expirated bloodspatter
- (2010) Andrea E. Donaldson et al. INTERNATIONAL JOURNAL OF LEGAL MEDICINE
- The Human Oral Microbiome
- (2010) F. E. Dewhirst et al. JOURNAL OF BACTERIOLOGY
- miRBase: integrating microRNA annotation and deep-sequencing data
- (2010) A. Kozomara et al. NUCLEIC ACIDS RESEARCH
- Nanostructural and Transcriptomic Analyses of Human Saliva Derived Exosomes
- (2010) Viswanathan Palanisamy et al. PLoS One
- Identification of forensically relevant body fluids using a panel of differentially expressed microRNAs
- (2009) Erin K. Hanson et al. ANALYTICAL BIOCHEMISTRY
- Origins and Mechanisms of miRNAs and siRNAs
- (2009) Richard W. Carthew et al. CELL
- A novel method for the identification of saliva by detecting oral streptococci using PCR
- (2008) Hiroaki Nakanishi et al. FORENSIC SCIENCE INTERNATIONAL
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