Evaluation of two main RNA-seq approaches for gene quantification in clinical RNA sequencing: polyA+ selection versus rRNA depletion
Published 2018 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Evaluation of two main RNA-seq approaches for gene quantification in clinical RNA sequencing: polyA+ selection versus rRNA depletion
Authors
Keywords
-
Journal
Scientific Reports
Volume 8, Issue 1, Pages -
Publisher
Springer Nature
Online
2018-03-13
DOI
10.1038/s41598-018-23226-4
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- A review of genome-wide transcriptomics studies in Parkinson's disease
- (2017) Genevie Borrageiro et al. EUROPEAN JOURNAL OF NEUROSCIENCE
- High expression of long non-coding RNA NEAT1 indicates poor prognosis of human cancer
- (2017) Jian Fang et al. Oncotarget
- Comparative evaluation of rRNA depletion procedures for the improved analysis of bacterial biofilm and mixed pathogen culture transcriptomes
- (2017) Olga E. Petrova et al. Scientific Reports
- Long noncoding RNAs: Re-writing dogmas of RNA processing and stability
- (2016) Jeremy E. Wilusz Biochimica et Biophysica Acta-Gene Regulatory Mechanisms
- QuickRNASeq lifts large-scale RNA-seq data analyses to the next level of automation and interactive visualization
- (2016) Shanrong Zhao et al. BMC GENOMICS
- A subset of replication-dependent histone mRNAs are expressed as polyadenylated RNAs in terminally differentiated tissues
- (2016) Shawn M. Lyons et al. NUCLEIC ACIDS RESEARCH
- Comparative transcriptomic analysis of human and Drosophila extracellular vesicles
- (2016) Fabio Alexis Lefebvre et al. Scientific Reports
- A comprehensive evaluation of ensembl, RefSeq, and UCSC annotations in the context of RNA-seq read mapping and gene quantification
- (2015) Shanrong Zhao et al. BMC GENOMICS
- Comparison of stranded and non-stranded RNA-seq transcriptome profiling and investigation of gene overlap
- (2015) Shanrong Zhao et al. BMC GENOMICS
- Quantification of co-transcriptional splicing from RNA-Seq data
- (2015) Lydia Herzel et al. METHODS
- Analysis of intronic and exonic reads in RNA-seq data characterizes transcriptional and post-transcriptional regulation
- (2015) Dimos Gaidatzis et al. NATURE BIOTECHNOLOGY
- The human transcriptome across tissues and individuals
- (2015) M. Mele et al. SCIENCE
- RNAseq by Total RNA Library Identifies Additional RNAs Compared to Poly(A) RNA Library
- (2015) Yan Guo et al. Biomed Research International
- Union Exon Based Approach for RNA-Seq Gene Quantification: To Be or Not to Be?
- (2015) Shanrong Zhao et al. PLoS One
- Comparison of library preparation methods reveals their impact on interpretation of metatranscriptomic data
- (2014) Adriana Alberti et al. BMC GENOMICS
- Influence of RNA extraction methods and library selection schemes on RNA-seq data
- (2014) Marc Sultan et al. BMC GENOMICS
- Introduction to RNA-Seq and its Applications to Drug Discovery and Development
- (2014) Zainab Khatoon et al. DRUG DEVELOPMENT RESEARCH
- Integrative analysis of many RNA-seq datasets to study alternative splicing
- (2014) Wenyuan Li et al. METHODS
- Comparison of RNA-Seq and Microarray in Transcriptome Profiling of Activated T Cells
- (2014) Shanrong Zhao et al. PLoS One
- Assessment of the Impact of Using a Reference Transcriptome in Mapping Short RNA-Seq Reads
- (2014) Shanrong Zhao PLoS One
- featureCounts: an efficient general purpose program for assigning sequence reads to genomic features
- (2013) Y. Liao et al. BIOINFORMATICS
- Efficient cellular fractionation improves RNA sequencing analysis of mature and nascent transcripts from human tissues
- (2013) Ammar Zaghlool et al. BMC BIOTECHNOLOGY
- A Subset of Histone H2B Genes Produces Polyadenylated mRNAs under a Variety of Cellular Conditions
- (2013) Vijayalakshmi Kari et al. PLoS One
- Impact of Library Preparation on Downstream Analysis and Interpretation of RNA-Seq Data: Comparison between Illumina PolyA and NuGEN Ovation Protocol
- (2013) Zhifu Sun et al. PLoS One
- Next Generation Sequencing Analysis of Human Platelet PolyA+ mRNAs and rRNA-Depleted Total RNA
- (2013) Antheia Kissopoulou et al. PLoS One
- STAR: ultrafast universal RNA-seq aligner
- (2012) Alexander Dobin et al. BIOINFORMATICS
- Increased sensitivity of next generation sequencing-based expression profiling after globin reduction in human blood RNA
- (2012) Anastasios Mastrokolias et al. BMC GENOMICS
- GENCODE: The reference human genome annotation for The ENCODE Project
- (2012) J. Harrow et al. GENOME RESEARCH
- Landscape of transcription in human cells
- (2012) Sarah Djebali et al. NATURE
- The lncRNA Malat1 Is Dispensable for Mouse Development but Its Transcription Plays a cis-Regulatory Role in the Adult
- (2012) Bin Zhang et al. Cell Reports
- Identification of novel transcripts in annotated genomes using RNA-Seq
- (2011) A. Roberts et al. BIOINFORMATICS
- Total RNA sequencing reveals nascent transcription and widespread co-transcriptional splicing in the human brain
- (2011) Adam Ameur et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Genomewide characterization of non-polyadenylated RNAs
- (2011) Li Yang et al. GENOME BIOLOGY
- A long nuclear-retained non-coding RNA regulates synaptogenesis by modulating gene expression
- (2010) Delphine Bernard et al. EMBO JOURNAL
- A comparison between ribo-minus RNA-sequencing and polyA-selected RNA-sequencing
- (2010) Peng Cui et al. GENOMICS
- Identification of novel exons and transcribed regions by chimpanzee transcriptome sequencing
- (2010) Anna Wetterbom et al. GENOME BIOLOGY
- edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
- (2009) M. D. Robinson et al. BIOINFORMATICS
- Gene expression profiling of whole blood: Comparison of target preparation methods for accurate and reproducible microarray analysis
- (2009) Kristina Vartanian et al. BMC GENOMICS
- Metabolism and regulation of canonical histone mRNAs: life without a poly(A) tail
- (2008) William F. Marzluff et al. NATURE REVIEWS GENETICS
- RNA-Seq: a revolutionary tool for transcriptomics
- (2008) Zhong Wang et al. NATURE REVIEWS GENETICS
Find the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
SearchAdd your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload Now