Population genomic diversity and structure in the golden bandicoot: a history of isolation, extirpation, and conservation

Natural hybridization reduces vulnerability to climate change

(2023) Chris J. Brauer et al.   Nature Climate Change

Lights at the end of the tunnel: The incidence and characteristics of recovery for Australian threatened animals

(2023) John C.Z. Woinarski et al.   BIOLOGICAL CONSERVATION

Population genomics and conservation management of the threatened black-footed tree-rat (Mesembriomys gouldii) in northern Australia

(2023) Brenton von Takach et al.   HEREDITY

Long-unburnt habitat is critical for the conservation of threatened vertebrates across Australia

(2022) Brenton von Takach et al.   LANDSCAPE ECOLOGY

Conservation Genetics for Management of Threatened Plant and Animal Species

(2022) Kym Ottewell et al.   Diversity-Basel

Using PVA and captive breeding to balance trade-offs in the rescue of the island dibbler onto a new island ark

(2022) Zahra Aisya et al.   Scientific Reports

Population genomics of a predatory mammal reveals patterns of decline and impacts of exposure to toxic toads

(2022) Brenton von Takach et al.   MOLECULAR ECOLOGY

Genetic diversity loss in the Anthropocene

(2022) Moises Exposito-Alonso et al.   SCIENCE

Subspecies hybridization as a potential conservation tool in species reintroductions

(2021) L.J. Zecherle et al.   Evolutionary Applications

pixy : Unbiased estimation of nucleotide diversity and divergence in the presence of missing data

(2021) Katharine L Korunes et al.   Molecular Ecology Resources

Prioritising source populations for supplementing genetic diversity of reintroduced southern brown bandicoots Isoodon obesulus obesulus

(2021) Natasha M. Robinson et al.   CONSERVATION GENETICS

Population genomics and conservation management of a declining tropical rodent

(2021) Brenton von Takach et al.   HEREDITY

To mix or not to mix gene pools for threatened species management? Few studies use genetic data to examine the risks of both actions, but failing to do so leads disproportionately to recommendations for separate management

(2021) Erin Liddell et al.   BIOLOGICAL CONSERVATION

Integrating genomics in population models to forecast translocation success

(2021) Travis Seaborn et al.   RESTORATION ECOLOGY

A conservation genomics workflow to guide practical management actions

(2021) Maurizio Rossetto et al.   Global Ecology and Conservation

Global Commitments to Conserving and Monitoring Genetic Diversity Are Now Necessary and Feasible

(2021) Sean Hoban et al.   BIOSCIENCE

Museum genomics reveals the rapid decline and extinction of Australian rodents since European settlement

(2021) Emily Roycroft et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Unbiased population heterozygosity estimates from genome‐wide sequence data

(2021) Thomas L Schmidt et al.   Methods in Ecology and Evolution

Habitat selection by vulnerable golden bandicoots in the arid zone

(2021) Cheryl A. Lohr et al.   Ecology and Evolution

Is supplementation an efficient management action to increase genetic diversity in translocated populations?

(2020) Carlo Pacioni et al.   ECOLOGICAL MANAGEMENT & RESTORATION

Genetic diversity targets and indicators in the CBD post-2020 Global Biodiversity Framework must be improved

(2020) Sean Hoban et al.   BIOLOGICAL CONSERVATION

Genetic monitoring of the greater stick-nest rat meta-population for strategic supplementation planning

(2020) Lauren C. White et al.   CONSERVATION GENETICS

Patterns of niche contraction identify vital refuge areas for declining mammals

(2020) Brenton von Takach et al.   DIVERSITY AND DISTRIBUTIONS

Genetic mixing for population management: from genetic rescue to provenancing

(2020) Ary A. Hoffmann et al.   Evolutionary Applications

Disentangling the Genetic Relationships of Three Closely Related Bandicoot Species across Southern and Western Australia

(2020) Rujiporn Thavornkanlapachai et al.   Diversity-Basel

Insights from genomes into the evolutionary importance and prevalence of hybridization in nature

(2019) Scott A. Taylor et al.   Nature Ecology & Evolution

Estimated six percent loss of genetic variation in wild populations since the industrial revolution

(2019) Deborah M. Leigh et al.   Evolutionary Applications

Threat webs: reframing the co‐occurrence and interactions of threats to biodiversity

(2019) William L. Geary et al.   JOURNAL OF APPLIED ECOLOGY

metapop 2: Re‐implementation of software for the analysis and management of subdivided populations using gene and allelic diversity

(2019) Eugenio López‐Cortegano et al.   Molecular Ecology Resources

Hybridization as a conservation management tool

(2019) Wing Yan Chan et al.   Conservation Letters

From reference genomes to population genomics: comparing three reference-aligned reduced-representation sequencing pipelines in two wildlife species

(2019) Belinda Wright et al.   BMC GENOMICS

Mixing Genetically and Morphologically Distinct Populations in Translocations: Asymmetrical Introgression in A Newly Established Population of the Boodie (Bettongia lesueur)

(2019) Rujiporn Thavornkanlapachai et al.   Genes

Reading the black book: The number, timing, distribution and causes of listed extinctions in Australia

(2019) J.C.Z. Woinarski et al.   BIOLOGICAL CONSERVATION

Population Genomics of Bettongia lesueur: Admixing Increases Genetic Diversity with no Evidence of Outbreeding Depression

(2019) Kate Rick et al.   Genes

Declining populations in one of the last refuges for threatened mammal species in northern Australia

(2018) Hugh F. Davies et al.   AUSTRAL ECOLOGY

dartr : An r package to facilitate analysis of SNP data generated from reduced representation genome sequencing

(2018) Bernd Gruber et al.   Molecular Ecology Resources

The community and ecosystem consequences of intraspecific diversity: a meta-analysis

(2018) Allan Raffard et al.   BIOLOGICAL REVIEWS

Call for a Paradigm Shift in the Genetic Management of Fragmented Populations

(2017) Katherine Ralls et al.   Conservation Letters

Genetic rescue increases fitness and aids rapid recovery of an endangered marsupial population

(2017) Andrew R. Weeks et al.   Nature Communications

Converting quadratic entropy to diversity: Both animals and alleles are diverse, but some are more diverse than others

(2017) Peter E. Smouse et al.   PLoS One

The biology and palaeontology of the Peramelemorphia: a review of current knowledge and future research directions

(2016) N. M. Warburton et al.   AUSTRALIAN JOURNAL OF ZOOLOGY

Conservation of genetic uniqueness of populations may increase extinction likelihood of endangered species: the case of Australian mammals

(2016) Andrew R. Weeks et al.   Frontiers in Zoology

Scope for genetic rescue of an endangered subspecies though re-establishing natural gene flow with another subspecies

(2016) Katherine A. Harrisson et al.   MOLECULAR ECOLOGY

Making sense of genomic islands of differentiation in light of speciation

(2016) Jochen B. W. Wolf et al.   NATURE REVIEWS GENETICS

Improving policy efficiency and effectiveness to save more species: A case study of the megadiverse country Australia

(2015) Jane A. McDonald et al.   BIOLOGICAL CONSERVATION

Genetic load, inbreeding depression, and hybrid vigor covary with population size: An empirical evaluation of theoretical predictions

(2015) Jennifer N. Lohr et al.   EVOLUTION

The conservation genetics juggling act: integrating genetics and ecology, science and policy

(2015) Susan M. Haig et al.   Evolutionary Applications

Genetic rescue of small inbred populations: meta-analysis reveals large and consistent benefits of gene flow

(2015) Richard Frankham   MOLECULAR ECOLOGY

Ongoing unraveling of a continental fauna: Decline and extinction of Australian mammals since European settlement

(2015) John C. Z. Woinarski et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

LEA: AnRpackage for landscape and ecological association studies

(2015) Eric Frichot et al.   Methods in Ecology and Evolution

Evaluating success of translocations in maintaining genetic diversity in a threatened mammal

(2014) Kym Ottewell et al.   BIOLOGICAL CONSERVATION

Genetics in conservation management: Revised recommendations for the 50/500 rules, Red List criteria and population viability analyses

(2014) Richard Frankham et al.   BIOLOGICAL CONSERVATION

Fast and Efficient Estimation of Individual Ancestry Coefficients

(2014) Eric Frichot et al.   GENETICS

Poppr: an R package for genetic analysis of populations with clonal, partially clonal, and/or sexual reproduction

(2014) Zhian N. Kamvar et al.   PeerJ

The “Evolutionarily Significant Unit” concept and its applicability in biological conservation

(2013) L. P. Casacci et al.   ITALIAN JOURNAL OF ZOOLOGY

Stacks: an analysis tool set for population genomics

(2013) Julian Catchen et al.   MOLECULAR ECOLOGY

GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research--an update

(2012) R. Peakall et al.   BIOINFORMATICS

Genetic Diversity Enhances Restoration Success by Augmenting Ecosystem Services

(2012) Laura K. Reynolds et al.   PLoS One

Prioritizing threat management for biodiversity conservation

(2012) Josie Carwardine et al.   Conservation Letters

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

Predicting the Probability of Outbreeding Depression

(2011) RICHARD FRANKHAM et al.   CONSERVATION BIOLOGY

Assessing the benefits and risks of translocations in changing environments: a genetic perspective

(2011) Andrew R. Weeks et al.   Evolutionary Applications

Phylogenetic relationships of living and recently extinct bandicoots based on nuclear and mitochondrial DNA sequences

(2011) M. Westerman et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

The disappearing mammal fauna of northern Australia: context, cause, and response

(2011) John C. Z. Woinarski et al.   Conservation Letters

Discriminant analysis of principal components: a new method for the analysis of genetically structured populations

(2010) Thibaut Jombart et al.   BMC GENETICS

Hybridization rapidly reduces fitness of a native trout in the wild

(2009) C. C. Muhlfeld et al.   Biology Letters

Marxan with Zones: Software for optimal conservation based land- and sea-use zoning

(2009) Matthew E. Watts et al.   ENVIRONMENTAL MODELLING & SOFTWARE

adegenet: a R package for the multivariate analysis of genetic markers

(2008) Thibaut Jombart   BIOINFORMATICS

Using SiZer to detect thresholds in ecological data

(2008) Derek L Sonderegger et al.   FRONTIERS IN ECOLOGY AND THE ENVIRONMENT