Population genomics and conservation management of the threatened black-footed tree-rat (Mesembriomys gouldii) in northern Australia

Long-unburnt habitat is critical for the conservation of threatened vertebrates across Australia

(2022) Brenton von Takach et al.   LANDSCAPE ECOLOGY

Population genomics of a predatory mammal reveals patterns of decline and impacts of exposure to toxic toads

(2022) Brenton von Takach et al.   MOLECULAR ECOLOGY

Population genomics and conservation management of a declining tropical rodent

(2021) Brenton von Takach et al.   HEREDITY

Scale‐dependent signatures of local adaptation in a foundation tree species

(2021) Brenton von Takach et al.   MOLECULAR ECOLOGY

Unexpected overlapping use of tree hollows by birds, reptiles and declining mammals in an Australian tropical savanna

(2021) Cara E. Penton et al.   BIODIVERSITY AND CONSERVATION

A novel framework for evaluating in‐situ breeding management strategies in endangered populations

(2021) Diana A Robledo‐Ruiz et al.   Molecular Ecology Resources

Museum genomics reveals the rapid decline and extinction of Australian rodents since European settlement

(2021) Emily Roycroft et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Unbiased population heterozygosity estimates from genome‐wide sequence data

(2021) Thomas L Schmidt et al.   Methods in Ecology and Evolution

A Hollow Argument: Understory Vegetation and Disturbance Determine Abundance of Hollow-Dependent Mammals in an Australian Tropical Savanna

(2021) Cara E. Penton et al.   Frontiers in Ecology and Evolution

Landscape-Scale Effects of Fire, Cats, and Feral Livestock on Threatened Savanna Mammals: Unburnt Habitat Matters More Than Pyrodiversity

(2021) Ian J. Radford et al.   Frontiers in Ecology and Evolution

Genetic diversity targets and indicators in the CBD post-2020 Global Biodiversity Framework must be improved

(2020) Sean Hoban et al.   BIOLOGICAL CONSERVATION

Bottom-up and top-down processes influence contemporary patterns of mammal species richness in Australia's monsoonal tropics

(2020) A.M. Stobo-Wilson et al.   BIOLOGICAL CONSERVATION

Genetic monitoring of the greater stick-nest rat meta-population for strategic supplementation planning

(2020) Lauren C. White et al.   CONSERVATION GENETICS

Patterns of niche contraction identify vital refuge areas for declining mammals

(2020) Brenton von Takach et al.   DIVERSITY AND DISTRIBUTIONS

Overlapping den tree selection by three declining arboreal mammal species in an Australian tropical savanna

(2020) Cara E Penton et al.   JOURNAL OF MAMMALOGY

Phylogenomics Uncovers Confidence and Conflict in the Rapid Radiation of Australo-Papuan Rodents

(2019) Emily J Roycroft et al.   SYSTEMATIC BIOLOGY

Habitat selection and genetic diversity of a reintroduced ‘refugee species’

(2019) K. Abicair et al.   ANIMAL CONSERVATION

Reading the black book: The number, timing, distribution and causes of listed extinctions in Australia

(2019) J.C.Z. Woinarski et al.   BIOLOGICAL CONSERVATION

Spending to save: What will it cost to halt Australia's extinction crisis?

(2019) Brendan A. Wintle et al.   Conservation Letters

Population Genomics of Bettongia lesueur: Admixing Increases Genetic Diversity with no Evidence of Outbreeding Depression

(2019) Kate Rick et al.   Genes

The influence of fire and silvicultural practices on the landscape-scale genetic structure of an Australian foundation tree species

(2019) Brenton von Takach Dukai et al.   CONSERVATION GENETICS

Pervasive human-driven decline of life on Earth points to the need for transformative change

(2019) Sandra Díaz et al.   SCIENCE

Fast inference of individual admixture coefficients using geographic data

(2018) Kevin Caye et al.   Annals of Applied Statistics

Declining populations in one of the last refuges for threatened mammal species in northern Australia

(2018) Hugh F. Davies et al.   AUSTRAL ECOLOGY

Seascape genomics reveals adaptive divergence in a connected and commercially important mollusc, the greenlip abalone (Haliotis laevigata ), along a longitudinal environmental gradient

(2018) Jonathan Sandoval-Castillo et al.   MOLECULAR ECOLOGY

Integrative approaches to guide conservation decisions: using genomics to define conservation units and functional corridors

(2018) S Barbosa et al.   MOLECULAR ECOLOGY

How to estimate kinship

(2018) Jérôme Goudet et al.   MOLECULAR ECOLOGY

A Unified Characterization of Population Structure and Relatedness

(2017) Bruce S. Weir et al.   GENETICS

Niche Contractions in Declining Species: Mechanisms and Consequences

(2017) Ben C. Scheele et al.   TRENDS IN ECOLOGY & EVOLUTION

A Unified Characterization of Population Structure and Relatedness

(2017) Bruce S. Weir et al.   GENETICS

Congruent biogeographical disjunctions at a continent-wide scale: Quantifying and clarifying the role of biogeographic barriers in the Australian tropics

(2017) Robert D. Edwards et al.   PLoS One

Top-down control of species distributions: feral cats driving the regional extinction of a threatened rodent in northern Australia

(2016) Hugh F. Davies et al.   DIVERSITY AND DISTRIBUTIONS

Identifying outlier loci in admixed and in continuous populations using ancestral population differentiation statistics

(2016) Helena Martins et al.   MOLECULAR ECOLOGY

Reliable Detection of Loci Responsible for Local Adaptation: Inference of a Null Model through Trimming the Distribution of FST

(2015) Michael C. Whitlock et al.   AMERICAN NATURALIST

Bridging the gap: a genetic assessment framework for population-level threatened plant conservation prioritization and decision-making

(2015) Kym M. Ottewell et al.   DIVERSITY AND DISTRIBUTIONS

TESS3: fast inference of spatial population structure and genome scans for selection

(2015) Kevin Caye et al.   Molecular Ecology Resources

LEA: AnRpackage for landscape and ecological association studies

(2015) Eric Frichot et al.   Methods in Ecology and Evolution

SNeP: a tool to estimate trends in recent effective population size trajectories using genome-wide SNP data

(2015) Mario Barbato et al.   Frontiers in Genetics

Accelerated modern human-induced species losses: Entering the sixth mass extinction

(2015) G. Ceballos et al.   Science Advances

Taxonomy of rock-wallabies, Petrogale (Marsupialia: Macropodidae). IV. Multifaceted study of the brachyotis group identifies additional taxa

(2014) Sally Potter et al.   AUSTRALIAN JOURNAL OF ZOOLOGY

Evaluating success of translocations in maintaining genetic diversity in a threatened mammal

(2014) Kym Ottewell et al.   BIOLOGICAL CONSERVATION

ANGSD: Analysis of Next Generation Sequencing Data

(2014) Thorfinn Sand Korneliussen et al.   BMC BIOINFORMATICS

Allelic Richness following Population Founding Events – A Stochastic Modeling Framework Incorporating Gene Flow and Genetic Drift

(2014) Gili Greenbaum et al.   PLoS One

PopGenReport: simplifying basic population genetic analyses in R

(2014) Aaron T. Adamack et al.   Methods in Ecology and Evolution

Poppr: an R package for genetic analysis of populations with clonal, partially clonal, and/or sexual reproduction

(2014) Zhian N. Kamvar et al.   PeerJ

Allelic Diversity and Its Implications for the Rate of Adaptation

(2013) A. Caballero et al.   GENETICS

The biogeographical boundaries of northern Australia: evidence from ecological niche models and a multi-locus phylogeny ofUperoleiatoadlets (Anura: Myobatrachidae)

(2013) Renee A. Catullo et al.   JOURNAL OF BIOGEOGRAPHY

Stacks: an analysis tool set for population genomics

(2013) Julian Catchen et al.   MOLECULAR ECOLOGY

StAMPP: an R package for calculation of genetic differentiation and structure of mixed-ploidy level populations

(2013) Luke W. Pembleton et al.   Molecular Ecology Resources

Generation length for mammals

(2013) Moreno Di Marco et al.   Nature Conservation-Bulgaria

Biogeographic barriers in north-western Australia: an overview and standardisation of nomenclature

(2012) Mark D. B. Eldridge et al.   AUSTRALIAN JOURNAL OF ZOOLOGY

A high-performance computing toolset for relatedness and principal component analysis of SNP data

(2012) X. Zheng et al.   BIOINFORMATICS

Estimation of historical effective population size using linkage disequilibria with marker data

(2012) L.J. Corbin et al.   JOURNAL OF ANIMAL BREEDING AND GENETICS

Double Digest RADseq: An Inexpensive Method for De Novo SNP Discovery and Genotyping in Model and Non-Model Species

(2012) Brant K. Peterson et al.   PLoS One

Harnessing genomics for delineating conservation units

(2012) W. Chris Funk et al.   TRENDS IN ECOLOGY & EVOLUTION

Inference of Population Splits and Mixtures from Genome-Wide Allele Frequency Data

(2012) Joseph K. Pickrell et al.   PLoS Genetics

Estimation of allele frequency and association mapping using next-generation sequencing data

(2011) Su Kim et al.   BMC BIOINFORMATICS

The disappearing mammal fauna of northern Australia: context, cause, and response

(2011) John C. Z. Woinarski et al.   Conservation Letters

Evolutionary origins and diversification of dragon lizards in Australia’s tropical savannas

(2010) J. Melville et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Monitoring indicates rapid and severe decline of native small mammals in Kakadu National Park, northern Australia

(2010) J. C. Z. Woinarski et al.   WILDLIFE RESEARCH

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Marxan with Zones: Software for optimal conservation based land- and sea-use zoning

(2009) Matthew E. Watts et al.   ENVIRONMENTAL MODELLING & SOFTWARE

Biogeography of the Australian monsoon tropics

(2009) D. M. J. S. Bowman et al.   JOURNAL OF BIOGEOGRAPHY

Pliocene colonization and adaptive radiations in Australia and New Guinea (Sahul): Multilocus systematics of the old endemic rodents (Muroidea: Murinae)

(2008) Kevin C. Rowe et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

The predictability of extinction: biological and external correlates of decline in mammals

(2008) M. Cardillo et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The Status of the World's Land and Marine Mammals: Diversity, Threat, and Knowledge

(2008) J. Schipper et al.   SCIENCE