4.5 Review

G-quadruplexes in cancer-related gene promoters: from identification to therapeutic targeting

Journal

EXPERT OPINION ON THERAPEUTIC PATENTS
Volume -, Issue -, Pages -

Publisher

TAYLOR & FRANCIS LTD
DOI: 10.1080/13543776.2023.2271168

Keywords

Cancer; DNA G-quadruplex; G-quadruplex binding proteins; G-quadruplex ligands; G-quadruplex structures; gene promoters; oncogenes; patents

Ask authors/readers for more resources

Modulation of G-quadruplex (G4) formation has been proposed as a powerful tool for cancer treatment through the control of oncogene expression. This review provides an overview of current knowledge on G4s in human oncogene promoters and the most representative G4-binding ligands. Targeting G4s has the potential to develop novel and highly specific anticancer drugs capable of selectively impacting gene expression.
IntroductionGuanine-rich DNA sequences can fold into four-stranded noncanonical secondary structures called G-quadruplexes (G4s) which are widely distributed in functional regions of the human genome, such as telomeres and gene promoter regions. Compelling evidence suggests their involvement in key genome functions such as gene expression and genome stability. Notably, the abundance of G4-forming sequences near transcription start sites suggests their potential involvement in regulating oncogenes.Areas coveredThis review provides an overview of current knowledge on G4s in human oncogene promoters. The most representative G4-binding ligands have also been documented. The objective of this work is to present a comprehensive overview of the most promising targets for the development of novel and highly specific anticancer drugs capable of selectively impacting the expression of individual or a limited number of genes.Expert opinionModulation of G4 formation by specific ligands has been proposed as a powerful new tool to treat cancer through the control of oncogene expression. Actually, most of G4-binding small molecules seem to simultaneously target a range of gene promoter G4s, potentially influencing several critical driver genes in cancer, thus producing significant therapeutic benefits.

Authors

I am an author on this paper
Click your name to claim this paper and add it to your profile.

Reviews

Primary Rating

4.5
Not enough ratings

Secondary Ratings

Novelty
-
Significance
-
Scientific rigor
-
Rate this paper

Recommended

Article Biotechnology & Applied Microbiology

Human inhalable antibody fragments neutralizing SARS-CoV-2 variants for COVID-19 therapy

Olga Minenkova, Daniela Santapaola, Ferdinando Maria Milazzo, Anna Maria Anastasi, Gianfranco Battistuzzi, Caterina Chiapparino, Antonio Rosi, Giuseppe Gritti, Gianmaria Borleri, Alessandro Rambaldi, Clelia Dental, Cecile Viollet, Bruno Pagano, Laura Salvini, Emanuele Marra, Laura Luberto, Antonio Rossi, Anna Riccio, Emilio Merlo Pich, Maria Gabriella Santoro, Rita De Santis

Summary: A study has identified a human single chain antibody called 76clAbs that can block a key site on the SARS-CoV-2 spike protein, neutralize the Delta variant and other variants, and inhibit critical pathological features of COVID-19. Administered intranasally, it effectively combated infection in animal models. Therefore, 76clAbs may serve as a rapid and self-administrable early intervention tool independent of the immune status of SARS-CoV-2-infected individuals.

MOLECULAR THERAPY (2022)

Article Endocrinology & Metabolism

Histone lysine demethylase inhibition reprograms prostate cancer metabolism and mechanics

Ugo Chianese, Chiara Papulino, Eugenia Passaro, Tom MJ. Evers, Mehrad Babaei, Antonella Toraldo, Tommaso De Marchi, Emma Nimeus, Vincenzo Carafa, Maria Maddalena Nicoletti, Nunzio Del Gaudio, Nunzia Iaccarino, Antonio Randazzo, Dante Rotili, Antonello Mai, Salvatore Cappabianca, Alireza Mashaghi, Fortunato Ciardiello, Lucia Altucci, Rosaria Benedetti

Summary: This paper focuses on the aberrant activity of androgen receptor (AR) in prostate cancer (PCa) and castration-resistant PCa (CRPC), and how it can be regulated by epigenetic factors. The study explores the role of lysine-specific demethylases (KDMs) in regulating the transcriptional program of AR and highlights their potential use in resistance to androgen deprivation therapy.

MOLECULAR METABOLISM (2022)

Article Chemistry, Medicinal

Hit identification of novel small molecules interfering with MALAT1 triplex by a structure-based virtual screening

Roberta Rocca, Nicoletta Polera, Giada Juli, Katia Grillone, Annalisa Maruca, Maria Teresa Di Martino, Anna Artese, Jussara Amato, Bruno Pagano, Antonio Randazzo, Pietrosandro Tagliaferri, Pierfrancesco Tassone, Stefano Alcaro

Summary: RNA is currently a target of interest for the design of new small molecules with diverse pharmacological activities. Among these RNA molecules, long noncoding RNAs (lncRNAs) have been extensively associated with cancer pathogenesis. In particular, the overexpression of lncRNA metastasis-associated lung adenocarcinoma transcript 1 (MALAT1) plays a crucial role in the development of multiple myeloma (MM). By utilizing the crystallographic structure of the triple-helical stability element of MALAT1, a structure-based virtual screening was conducted on a large commercial database, and five compounds were selected for in vitro assays. Among them, compound M5 showed the most promising results, destabilizing the MALAT1 triplex structure and demonstrating antiproliferative activity in MM cell models. M5 is suggested as a lead compound for further optimization to enhance its affinity towards MALAT1.

ARCHIV DER PHARMAZIE (2023)

Article Cell & Tissue Engineering

Targeting G-quadruplex motifs interferes with differentiation of adipose-derived mesenchymal stem cells

Maria Rosaria Ambrosio, Teresa Migliaccio, Fabiana Napolitano, Sarah Di Somma, Giovanni Maneli, Jussara Amato, Bruno Pagano, Antonio Randazzo, Giuseppe Portella, Pietro Formisano, Anna Maria Malfitano

Summary: In this study, the role of G4 motifs in adipogenic differentiation was investigated using human adipose-derived mesenchymal stem cells (ASCs). The results showed that G4 structures were increased in differentiated adipocytes compared to their precursors, and treatment with the G4 ligand Braco-19 reduced G4 content in the mature adipocytes. Furthermore, Braco-19 caused morphological changes and reduced lipid droplet formation and key gene expression in the mature adipocytes. These findings reveal a new role of G4 motifs in human adipocyte differentiation.

STEM CELL RESEARCH & THERAPY (2023)

Article Biochemistry & Molecular Biology

Over-Expressed GATA-1S, the Short Isoform of the Hematopoietic Transcriptional Factor GATA-1, Inhibits Ferroptosis in K562 Myeloid Leukemia Cells by Preventing Lipid Peroxidation

Silvia Trombetti, Nunzia Iaccarino, Patrizia Riccio, Raffaele Sessa, Rosa Catapano, Marcella Salvatore, Stelina Luka, Sergio de Nicola, Paola Izzo, Sante Roperto, Pasqualino Maddalena, Antonio Randazzo, Michela Grosso

Summary: Ferroptosis is a regulated cell death involving lipid peroxidation. GPX4 plays a central role in its regulation. Ferroptosis is connected to lipid metabolism, cancer onset, and drug resistance. GATA-1 isoforms, particularly GATA-1(S), are involved in hematological malignancies. Overexpression of GATA-1(S) prevents ferroptosis in leukemia cells. Targeting ferroptosis is a promising strategy to overcome drug resistance in hematological malignancies.

ANTIOXIDANTS (2023)

Article Spectroscopy

Cytosine epigenetic modifications and conformational changes in G-quadruplex DNA: An ultraviolet resonance Raman spectroscopy study

Francesco D'Amico, Raffaele Graziano, Federica D'Aria, Pasquale Russomanno, Silvia Di Fonzo, Jussara Amato, Bruno Pagano

Summary: Epigenetic modifications of DNA and G-quadruplex structures are closely related and can be studied using UV resonance Raman spectroscopy. This study demonstrates that UVRR spectroscopy can detect spectral changes in G-quadruplex structures and indirectly identify modifications in guanine glycosidic conformations and changes induced by H-bond formation or hydration. These findings support the usefulness of UVRR spectroscopy for studying G-quadruplex structures in biologically relevant conditions.

SPECTROCHIMICA ACTA PART A-MOLECULAR AND BIOMOLECULAR SPECTROSCOPY (2023)

Article Chemistry, Analytical

Comparison of the biological effects of gadodiamide (Omniscan) and gadoteridol (ProHance) by means of multi-organ and plasma metabolomics

Francesca Romano, Enza Di Gregorio, Gelsomina Riccardi, Chiara Furlan, Nicola Cavallini, Francesco Savorani, Anna Di Porzio, Stefano De Tito, Antonio Randazzo, Eliana Gianolio, Nunzia Iaccarino

Summary: In this study, the effects of multiple administrations of linear and macrocyclic gadolinium-based contrast agents (GBCAs) on the metabolic pathways in healthy mice were investigated. The results showed that the linear GBCA had a significant impact on organs such as the brain, cerebellum, and liver, while the macrocyclic GBCA had a smaller effect. This study paves the way for the safer use of commercially available GBCAs and the development of new GBCAs with lower toxicity.

ANALYST (2023)

Article Chemistry, Physical

Conformational plasticity of DNA secondary structures: probing the conversion between i-motif and hairpin species by circular dichroism and ultraviolet resonance Raman spectroscopies

Jussara Amato, Nunzia Iaccarino, Federica D'Aria, Francesco D'Amico, Antonio Randazzo, Concetta Giancola, Attilio Cesaro, Silvia Di Fonzo, Bruno Pagano

Summary: This study investigates the conformational equilibria of sequences forming noncanonical DNA structures in the promoter regions of important oncogenes BCL2 and KRAS, and their dependence on pH and cell-mimicking molecular crowding conditions. The results reveal that the i-motif structures in the promoters of BCL2 and KRAS are highly dynamic and exist in pH-dependent equilibrium with hairpin and hybrid i-motif/hairpin species. The study provides valuable insights into the factors that influence the molecular-level equilibrium between different conformational species involved in oncogene expression.

PHYSICAL CHEMISTRY CHEMICAL PHYSICS (2022)

Article Thermodynamics

Thermodynamic properties of hydroxypropyl-β-cyclodextrin/guest interaction: a survey of recent studies

Federica D'Aria, Bruno Pagano, Concetta Giancola

Summary: Cyclodextrins (CDs) have been shown to improve the stability, solubility, and bioavailability of various molecules, with low toxicity for different routes of administration. Isothermal titration calorimetry (ITC) is a key method for studying cyclodextrin/guest interaction, providing important thermodynamic parameters simultaneously.

JOURNAL OF THERMAL ANALYSIS AND CALORIMETRY (2022)

No Data Available