Chronosequence of invasion reveals minimal losses of population genomic diversity, niche expansion, and trait divergence in the polyploid, leafy spurge

Changes in phenology can alter patterns of natural selection: the joint evolution of germination time and postgermination traits

(2023) Michelle D'Aguillo et al.   NEW PHYTOLOGIST

A population-level statistic for assessing Mendelian behavior of genotyping-by-sequencing data from highly duplicated genomes

(2022) Lindsay V. Clark et al.   BMC BIOINFORMATICS

Linking ecological niche models and common garden experiments to predict phenotypic differentiation in stressful environments: Assessing the adaptive value of marginal populations in an alpine plant

(2022) Javier Morente‐López et al.   GLOBAL CHANGE BIOLOGY

Abiotic niche divergence of hybrid species from their progenitors

(2022) Danying Wang et al.   AMERICAN NATURALIST

Post‐introduction evolution of a rapid life‐history strategy in a newly invasive plant

(2022) Ellen C. Woods et al.   ECOLOGY

Variation in reproductive mode across the latitudinal range of invasive Russian knapweed

(2022) John F Gaskin et al.   AoB Plants

High genetic diversity in the landscape suggests frequent seedling recruitment by Euphorbia virgata Waldst. & Kit. (leafy spurge) in the northern U.S.A

(2022) Natalie M. West et al.   BIOLOGICAL INVASIONS

Intraspecific trait variation in plants: a renewed focus on its role in ecological processes

(2021) A C Westerband et al.   ANNALS OF BOTANY

Autopolyploids of Arabidopsis thaliana are more phenotypically plastic than their diploid progenitors

(2021) Kali Z Mattingly et al.   ANNALS OF BOTANY

Introgression shapes fruit color convergence in invasive Galápagos tomato

(2021) Matthew JS Gibson et al.   eLife

Climatic niche shifts in introduced species

(2021) Olivia K. Bates et al.   CURRENT BIOLOGY

GenoDive v. 3.0: Easy‐to‐use software for the analysis of genetic data of diploids and polyploids

(2020) Patrick G. Meirmans   Molecular Ecology Resources

Rapid and strong population genetic differentiation and genomic signatures of climatic adaptation in an invasive mealybug

(2020) Ling Ma et al.   DIVERSITY AND DISTRIBUTIONS

Managing invasive plants on Great Plains grasslands: A discussion of current challenges

(2020) John F. Gaskin et al.   Rangeland Ecology & Management

Genomic Prediction of (Mal)Adaptation Across Current and Future Climatic Landscapes

(2020) Thibaut Capblancq et al.   Annual Review of Ecology Evolution and Systematics

Most invasive species largely conserve their climatic niche

(2020) Chunlong Liu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

polyRAD: Genotype Calling with Uncertainty from Sequencing Data in Polyploids and Diploids

(2019) Lindsay V. Clark et al.   G3-Genes Genomes Genetics

Standards for distribution models in biodiversity assessments

(2019) Miguel B. Araújo et al.   Science Advances

The global biogeography of polyploid plants

(2019) Anna Rice et al.   Nature Ecology & Evolution

Does adaptation to historical climate shape plant responses to future rainfall patterns? A rainfall manipulation experiment with common ragweed

(2019) Amanda J. Gorton et al.   OECOLOGIA

Stacks 2: analytical methods for paired‐end sequencing improve RADseq‐based population genomics

(2019) Nicolas C. Rochette et al.   MOLECULAR ECOLOGY

Priors for Genotyping Polyploids

(2019) David Gerard et al.   BIOINFORMATICS

Incorporating intraspecific variation into species distribution models improves distribution predictions, but cannot predict species traits for a wide‐spread plant species

(2019) Nathalie Isabelle Chardon et al.   ECOGRAPHY

Polyploid plants have faster rates of multivariate niche differentiation than their diploid relatives

(2019) Anthony E. Baniaga et al.   ECOLOGY LETTERS

Increased Adaptive Variation Despite Reduced Overall Genetic Diversity in a Rapidly Adapting Invader

(2019) Daniel Selechnik et al.   Frontiers in Genetics

Higher ploidy is associated with reduced range breadth in the Potentilleae tribe

(2018) Hayley A. Brittingham et al.   AMERICAN JOURNAL OF BOTANY

Rapid and repeated local adaptation to climate in an invasive plant

(2018) Lotte A. van Boheemen et al.   NEW PHYTOLOGIST

DnaSP 6: DNA Sequence Polymorphism Analysis of Large Data Sets

(2017) Julio Rozas et al.   MOLECULAR BIOLOGY AND EVOLUTION

Structure_threader : An improved method for automation and parallelization of programs structure , fastStructure and MavericK on multicore CPU systems

(2017) Francisco Pina-Martins et al.   Molecular Ecology Resources

Density dependence in demography and dispersal generates fluctuating invasion speeds

(2017) Lauren L. Sullivan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Climatic niche shifts are common in introduced plants

(2017) Daniel Z. Atwater et al.   Nature Ecology & Evolution

The ecological importance of intraspecific variation

(2017) Simone Des Roches et al.   Nature Ecology & Evolution

Population genetics and adaptation to climate along elevation gradients in invasive Solidago canadensis

(2017) Emily V. Moran et al.   PLoS One

Do Ecological Niche Models Accurately Identify Climatic Determinants of Species Ranges?

(2016) Christopher A. Searcy et al.   AMERICAN NATURALIST

Selecting predictors to maximize the transferability of species distribution models: lessons from cross-continental plant invasions

(2016) Blaise Petitpierre et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Invasive plant species are locally adapted just as frequently and at least as strongly as native plant species

(2016) Ayub M.O. Oduor et al.   JOURNAL OF ECOLOGY

Patterns of abiotic niche shifts in allopolyploids relative to their progenitors

(2016) D. Blaine Marchant et al.   NEW PHYTOLOGIST

Rapid evolution accelerates plant population spread in fragmented experimental landscapes

(2016) Jennifer L. Williams et al.   SCIENCE

Plants and climate change: complexities and surprises

(2015) C. Parmesan et al.   ANNALS OF BOTANY

Evolution of phenotypic plasticity in colonizing species

(2015) Russell Lande   MOLECULAR ECOLOGY

Contemporary evolution during invasion: evidence for differentiation, natural selection, and local adaptation

(2015) Robert I. Colautti et al.   MOLECULAR ECOLOGY

Novel R tools for analysis of genome-wide population genetic data with emphasis on clonality

(2015) Zhian N. Kamvar et al.   Frontiers in Genetics

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Evidence for shared broad-scale climatic niches of diploid and polyploid plants

(2014) K. L. Glennon et al.   ECOLOGY LETTERS

Biological invasions, climate change and genomics

(2014) Steven L. Chown et al.   Evolutionary Applications

The genetic signature of rapid range expansions: How dispersal, growth and invasion speed impact heterozygosity and allele surfing

(2014) Devin W. Goodsman et al.   THEORETICAL POPULATION BIOLOGY

Temperature-dependent shifts in phenology contribute to the success of exotic species with climate change

(2013) Elizabeth M. Wolkovich et al.   AMERICAN JOURNAL OF BOTANY

A practical guide to MaxEnt for modeling species’ distributions: what it does, and why inputs and settings matter

(2013) Cory Merow et al.   ECOGRAPHY

DETECTING RANGE EXPANSIONS FROM GENETIC DATA

(2013) Benjamin M. Peter et al.   EVOLUTION

On the accumulation of deleterious mutations during range expansions

(2013) S. Peischl et al.   MOLECULAR ECOLOGY

Recent progress and challenges in population genetics of polyploid organisms: an overview of current state-of-the-art molecular and statistical tools

(2013) France Dufresne et al.   MOLECULAR ECOLOGY

NeEstimatorv2: re-implementation of software for the estimation of contemporary effective population size (Ne) from genetic data

(2013) C. Do et al.   Molecular Ecology Resources

Rapid Adaptation to Climate Facilitates Range Expansion of an Invasive Plant

(2013) R. I. Colautti et al.   SCIENCE

A worldwide molecular phylogeny and classification of the leafy spurges, Euphorbia subgenus Esula (Euphorbiaceae)

(2013) Ricarda Riina et al.   TAXON

Serial Founder Effects During Range Expansion: A Spatial Analog of Genetic Drift

(2012) M. Slatkin et al.   GENETICS

AMOVA-Based Clustering of Population Genetic Data

(2012) Patrick G. Meirmans   JOURNAL OF HEREDITY

Climatic Niche Shifts Are Rare Among Terrestrial Plant Invaders

(2012) B. Petitpierre et al.   SCIENCE

The Rate of Beneficial Mutations Surfing on the Wave of a Range Expansion

(2012) Rémi Lehe et al.   PLoS Computational Biology

The more the better? The role of polyploidy in facilitating plant invasions

(2011) M. te Beest et al.   ANNALS OF BOTANY

Founder events predict changes in genetic diversity during human-mediated range expansions

(2011) Tobias Uller et al.   GLOBAL CHANGE BIOLOGY

Ploidy influences rarity and invasiveness in plants

(2011) Maharaj K. Pandit et al.   JOURNAL OF ECOLOGY

Climate change and weed adaptation: can evolution of invasive plants lead to greater range expansion than forecasted?

(2011) D R CLEMENTS et al.   WEED RESEARCH

STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method

(2011) Dent A. Earl et al.   Conservation Genetics Resources

Germination, Postgermination Adaptation, and Species Ecological Ranges

(2010) Kathleen Donohue et al.   Annual Review of Ecology Evolution and Systematics

Genomic admixture increases fitness during a biological invasion

(2010) S. R. KELLER et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

The making of a rapid plant invader: genetic diversity and differentiation in the native and invaded range of Senecio inaequidens

(2010) SUSANNE LACHMUTH et al.   MOLECULAR ECOLOGY

Species Distribution Models: Ecological Explanation and Prediction Across Space and Time

(2009) Jane Elith et al.   Annual Review of Ecology Evolution and Systematics

Shift in cytotype frequency and niche space in the invasive plantCentaurea maculosa

(2009) Urs A. Treier et al.   ECOLOGY

Niche shifts during the global invasion of the Asian tiger mosquito,Aedes albopictusSkuse (Culicidae), revealed by reciprocal distribution models

(2009) Kim A. Medley   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Highly Variable Spread Rates in Replicated Biological Invasions: Fundamental Limits to Predictability

(2009) B. A. Melbourne et al.   SCIENCE

adegenet: a R package for the multivariate analysis of genetic markers

(2008) Thibaut Jombart   BIOINFORMATICS

Modeling of species distributions with Maxent: new extensions and a comprehensive evaluation

(2008) Steven J. Phillips et al.   ECOGRAPHY

History, chance and adaptation during biological invasion: separating stochastic phenotypic evolution from response to selection

(2008) Stephen R. Keller et al.   ECOLOGY LETTERS

ENVIRONMENTAL NICHE EQUIVALENCY VERSUS CONSERVATISM: QUANTITATIVE APPROACHES TO NICHE EVOLUTION

(2008) Dan L. Warren et al.   EVOLUTION

Differences in plasticity between invasive and native plants from a low resource environment

(2008) Jennifer L. Funk   JOURNAL OF ECOLOGY

Surfing during population expansions promotes genetic revolutions and structuration

(2008) Laurent Excoffier et al.   TRENDS IN ECOLOGY & EVOLUTION

Adaptive evolution in invasive species

(2008) Peter J. Prentis et al.   TRENDS IN PLANT SCIENCE

The evolutionary consequences of biological invasions

(2007) ANDREW V. SUAREZ et al.   MOLECULAR ECOLOGY

Founding events in species invasions: genetic variation, adaptive evolution, and the role of multiple introductions

(2007) K. M. DLUGOSCH et al.   MOLECULAR ECOLOGY