A resource of single‐cell gene expression profiles in a planarian Dugesia japonica

Loss of plac8 expression rapidly leads pluripotent stem cells to enter active state during planarian regeneration

(2022) Hayoung Lee et al.   DEVELOPMENT

Migratory regulation by MTA homologous genes is essential for the uniform distribution of planarian adult pluripotent stem cells

(2022) Yuki Sato et al.   DEVELOPMENT GROWTH & DIFFERENTIATION

TAS-Seq is a robust and sensitive amplification method for bead-based scRNA-seq

(2022) Shigeyuki Shichino et al.   Communications Biology

Planarian stem cells specify fate yet retain potency during the cell cycle

(2021) Amelie A. Raz et al.   Cell Stem Cell

Mapping single-cell atlases throughout Metazoa unravels cell type evolution

(2021) Alexander J Tarashansky et al.   eLife

Integrated analysis of multimodal single-cell data

(2021) Yuhan Hao et al.   CELL

Identification of rare, transient post-mitotic cell states that are induced by injury and required for whole-body regeneration in Schmidtea mediterranea

(2021) Blair W. Benham-Pyle et al.   NATURE CELL BIOLOGY

Proliferation maintains the undifferentiated status of stem cells: The role of the planarian cell cycle regulator Cdh1

(2021) Yuki Sato et al.   DEVELOPMENTAL BIOLOGY

Dugesia japonica is the best suited of three planarian species for high-throughput toxicology screening

(2020) Danielle Ireland et al.   CHEMOSPHERE

What is the role of PIWI family proteins in adult pluripotent stem cells? Insights from asexually reproducing animals, planarians

(2020) Makoto Kashima et al.   DEVELOPMENT GROWTH & DIFFERENTIATION

Pluripotent Stem Cell-Based Cell Therapy—Promise and Challenges

(2020) Shinya Yamanaka   Cell Stem Cell

Lasy-Seq: a high-throughput library preparation method for RNA-Seq and its application in the analysis of plant responses to fluctuating temperatures

(2019) Mari Kamitani et al.   Scientific Reports

DoubletFinder: Doublet Detection in Single-Cell RNA Sequencing Data Using Artificial Nearest Neighbors

(2019) Christopher S. McGinnis et al.   Cell Systems

Cdc42 regulate the apoptotic cell death required for planarian epidermal regeneration and homeostasis

(2019) Sun Yujia et al.   INTERNATIONAL JOURNAL OF BIOCHEMISTRY & CELL BIOLOGY

Muscle functions as a connective tissue and source of extracellular matrix in planarians

(2019) Lauren E. Cote et al.   Nature Communications

OUP accepted manuscript

(2018)   BIOINFORMATICS

Prospectively Isolated Tetraspanin + Neoblasts Are Adult Pluripotent Stem Cells Underlying Planaria Regeneration

(2018) An Zeng et al.   CELL

Searching for non-transposable targets of planarian nuclear PIWI in pluripotent stem cells and differentiated cells

(2018) Makoto Kashima et al.   DEVELOPMENT GROWTH & DIFFERENTIATION

Role of MEKK1 in the anterior-posterior patterning during planarian regeneration

(2018) Kazutaka Hosoda et al.   DEVELOPMENT GROWTH & DIFFERENTIATION

Cell type transcriptome atlas for the planarianSchmidtea mediterranea

(2018) Christopher T. Fincher et al.   SCIENCE

Cell type atlas and lineage tree of a whole complex animal by single-cell transcriptomics

(2018) Mireya Plass et al.   SCIENCE

Draft genome of Dugesia japonica provides insights into conserved regulatory elements of the brain restriction gene nou-darake in planarians

(2018) Yang An et al.   Zoological Letters

SoxB1 Activity Regulates Sensory Neuron Regeneration, Maintenance, and Function in Planarians

(2018) Kelly G. Ross et al.   DEVELOPMENTAL CELL

UMI-tools: modeling sequencing errors in Unique Molecular Identifiers to improve quantification accuracy

(2017) Tom Smith et al.   GENOME RESEARCH

Salmon provides fast and bias-aware quantification of transcript expression

(2017) Rob Patro et al.   NATURE METHODS

Optimized dissociation protocol for isolating human glioma stem cells from tumorspheres via fluorescence-activated cell sorting

(2016) Donglai Lv et al.   CANCER LETTERS

Inheritance of a Nuclear PIWI from Pluripotent Stem Cells by Somatic Descendants Ensures Differentiation by Silencing Transposons in Planarian

(2016) Norito Shibata et al.   DEVELOPMENTAL CELL

A Generic and Cell-Type-Specific Wound Response Precedes Regeneration in Planarians

(2015) Omri Wurtzel et al.   DEVELOPMENTAL CELL

Planarians: an In Vivo Model for Regenerative Medicine

(2015) Ali Karami et al.   International Journal of Stem Cells

Unusually Large Number of Mutations in Asexually Reproducing Clonal Planarian Dugesia japonica

(2015) Osamu Nishimura et al.   PLoS One

Single-Cell Analysis Reveals Functionally Distinct Classes within the Planarian Stem Cell Compartment

(2014) Josien C. van Wolfswinkel et al.   Cell Stem Cell

Induction of Siglec-G by RNA Viruses Inhibits the Innate Immune Response by Promoting RIG-I Degradation

(2013) Weilin Chen et al.   CELL

Reactivating head regrowth in a regeneration-deficient planarian species

(2013) S.-Y. Liu et al.   NATURE

The molecular logic for planarian regeneration along the anterior–posterior axis

(2013) Yoshihiko Umesono et al.   NATURE

Amputation induces stem cell mobilization to sites of injury during planarian regeneration

(2012) O. C. Guedelhoefer et al.   DEVELOPMENT

The planarian P2X homolog in the regulation of asexual reproduction

(2012) Toshihide Sakurai et al.   INTERNATIONAL JOURNAL OF DEVELOPMENTAL BIOLOGY

Comprehensive gene expression analyses in pluripotent stem cells of a planarian, Dugesia japonica

(2012) Norito Shibata et al.   INTERNATIONAL JOURNAL OF DEVELOPMENTAL BIOLOGY

Regeneration in an evolutionarily primitive brain - the planarian Dugesia japonica model

(2011) Yoshihiko Umesono et al.   EUROPEAN JOURNAL OF NEUROSCIENCE

Clonogenic Neoblasts Are Pluripotent Adult Stem Cells That Underlie Planarian Regeneration

(2011) D. E. Wagner et al.   SCIENCE

Cellular and molecular dissection of pluripotent adult somatic stem cells in planarians

(2010) Norito Shibata et al.   DEVELOPMENT GROWTH & DIFFERENTIATION

Single-cell gene profiling of planarian stem cells using fluorescent activated cell sorting and its “index sorting” function for stem cell research

(2010) Tetsutaro Hayashi et al.   DEVELOPMENT GROWTH & DIFFERENTIATION

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS