The chromatin source-sink hypothesis: a shared mode of chromatin-mediated regulations

The molecular basis of heterochromatin assembly and epigenetic inheritance

(2023) Shiv I.S. Grewal   MOLECULAR CELL

Histone variants shape chromatin states in Arabidopsis

(2023) Bhagyshree Jamge et al.   eLife

Lamina-associated domains: Tethers and looseners

(2022) Stefano Giustino Manzo et al.   CURRENT OPINION IN CELL BIOLOGY

Versatile roles for histones in early development

(2022) Yuki Shindo et al.   CURRENT OPINION IN CELL BIOLOGY

Transposable element accumulation drives size differences among polymorphic Y Chromosomes in Drosophila

(2022) Alison Nguyen et al.   GENOME RESEARCH

Histone post-translational modifications — cause and consequence of genome function

(2022) Gonzalo Millán-Zambrano et al.   NATURE REVIEWS GENETICS

Roles of transposable elements in the regulation of mammalian transcription

(2022) Raquel Fueyo et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Evolution, structure and function of divergent macroH2A1 splice isoforms

(2022) Iva Guberovic et al.   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

Histone renegades: Unusual H2A histone variants in plants and animals

(2022) Akihisa Osakabe et al.   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

Histone H2A variants: Diversifying chromatin to ensure genome integrity

(2022) Philipp Oberdoerffer et al.   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

DNA methylation: a historical perspective

(2022) Alexandra L. Mattei et al.   TRENDS IN GENETICS

Hijacking of transcriptional condensates by endogenous retroviruses

(2022) Vahid Asimi et al.   NATURE GENETICS

Integrative studies of 3D genome organization and chromatin structure

(2022) Marco Di Stefano et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Towards a unification of the 2 meanings of “epigenetics”

(2022) Sui Huang   PLOS BIOLOGY

Annotation of chromatin states in 66 complete mouse epigenomes during development

(2021) Arjan van der Velde et al.   Communications Biology

The Yin and Yang of Histone Marks in Transcription

(2021) Paul B. Talbert et al.   Annual Review of Genomics and Human Genetics

The chromatin remodeler DDM1 prevents transposon mobility through deposition of histone variant H2A.W

(2021) Akihisa Osakabe et al.   NATURE CELL BIOLOGY

Epigenetics drive the evolution of sex chromosomes in animals and plants

(2021) Aline Muyle et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The histone variant H2A.W and linker histone H1 co-regulate heterochromatin accessibility and DNA methylation

(2021) Pierre Bourguet et al.   Nature Communications

Toxic Y chromosome: Increased repeat expression and age-associated heterochromatin loss in male Drosophila with a young Y chromosome

(2021) Alison H. Nguyen et al.   PLoS Genetics

Histone variant H2A.Z regulates zygotic genome activation

(2021) Dafne Ibarra-Morales et al.   Nature Communications

Endogenous Retroelements and the Viral Mimicry Response in Cancer Therapy and Cellular Homeostasis

(2021) Raymond Chen et al.   Cancer Discovery

SIRT6 is a DNA double-strand break sensor

(2020) Lior Onn et al.   eLife

The Drosophila Y chromosome affects heterochromatin integrity genome-wide

(2020) Emily J Brown et al.   MOLECULAR BIOLOGY AND EVOLUTION

Chromatin replication and epigenetic cell memory

(2020) Kathleen R. Stewart-Morgan et al.   NATURE CELL BIOLOGY

The roles of histone variants in fine-tuning chromatin organization and function

(2020) Sara Martire et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Control of the chromatin response to DNA damage: Histone proteins pull the strings

(2020) Juliette Ferrand et al.   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

Synergy between SIRT1 and SIRT6 helps recognize DNA breaks and potentiates the DNA damage response and repair in humans and mice

(2020) Fanbiao Meng et al.   eLife

Histone Variants: The Nexus of Developmental Decisions and Epigenetic Memory

(2020) Benjamin Loppin et al.   Annual Review of Genetics

A Synthetic Approach to Reconstruct the Evolutionary and Functional Innovations of the Plant Histone Variant H2A.W

(2020) Bingkun Lei et al.   CURRENT BIOLOGY

Histone isoforms and the oncohistone code

(2020) Andrew Flaus et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Ribosomal RNA genes shape chromatin domains associating with the nucleolus

(2019) Ariadna Picart-Picolo et al.   Nucleus

LINE1 Derepression in Aged Wild-Type and SIRT6-Deficient Mice Drives Inflammation

(2019) Matthew Simon et al.   Cell Metabolism

Histone variant macroH2A: from chromatin deposition to molecular function

(2019) Zhen Sun et al.   Essays in Biochemistry

Phosphorylation of histone H3.3 at serine 31 promotes p300 activity and enhancer acetylation

(2019) Sara Martire et al.   NATURE GENETICS

Histone concentration regulates the cell cycle and transcription in early development

(2019) Sudarshan Chari et al.   DEVELOPMENT

EvoChromo: towards a synthesis of chromatin biology and evolution

(2019) Ines A. Drinnenberg et al.   DEVELOPMENT

Host–transposon interactions: conflict, cooperation, and cooption

(2019) Rachel L Cosby et al.   GENES & DEVELOPMENT

DNA Methylation: Shared and Divergent Features across Eukaryotes

(2019) Robert J. Schmitz et al.   TRENDS IN GENETICS

Dosage Compensation of the X Chromosome: A Complex Epigenetic Assignment Involving Chromatin Regulators and Long Noncoding RNAs

(2018) Maria Samata et al.   Annual Review of Biochemistry

Placeholder Nucleosomes Underlie Germline-to-Embryo DNA Methylation Reprogramming

(2018) Patrick J. Murphy et al.   CELL

Histone H2A variants confer specific properties to nucleosomes and impact on chromatin accessibility

(2018) Akihisa Osakabe et al.   NUCLEIC ACIDS RESEARCH

The Chromatin Remodelers PKL and PIE1 Act in an Epigenetic Pathway That Determines H3K27me3 Homeostasis in Arabidopsis

(2018) Benjamin Carter et al.   PLANT CELL

Gene Expression Dominance in Allopolyploids: Hypotheses and Models

(2018) Samuel Bottani et al.   TRENDS IN PLANT SCIENCE

Developmentally regulated H2Av buffering via dynamic sequestration to lipid droplets in Drosophila embryos

(2018) Matthew Richard Johnson et al.   eLife

Heterochromatin-Enriched Assemblies Reveal the Sequence and Organization of the Drosophila melanogaster Y Chromosome

(2018) Ching-Ho Chang et al.   GENETICS

PIWI-interacting RNAs: small RNAs with big functions

(2018) Deniz M. Ozata et al.   NATURE REVIEWS GENETICS

Organizational principles of 3D genome architecture

(2018) M. Jordan Rowley et al.   NATURE REVIEWS GENETICS

Nucleosome structure and dynamics are coming of age

(2018) Keda Zhou et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Chromatin and nucleosome dynamics in DNA damage and repair

(2017) Michael H. Hauer et al.   GENES & DEVELOPMENT

Mechanisms of action and regulation of ATP-dependent chromatin-remodelling complexes

(2017) Cedric R. Clapier et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Dynamics of genome size evolution in birds and mammals

(2017) Aurélie Kapusta et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Competition between histone and transcription factor binding regulates the onset of transcription in zebrafish embryos

(2017) Shai R Joseph et al.   eLife

A Molecular Titration System Coordinates Ribosomal Protein Gene Transcription with Ribosomal RNA Synthesis

(2016) Benjamin Albert et al.   MOLECULAR CELL

Long Terminal Repeats: From Parasitic Elements to Building Blocks of the Transcriptional Regulatory Repertoire

(2016) Peter J. Thompson et al.   MOLECULAR CELL

Genome Stability and Evolution: Attempting a Holistic View

(2016) Ingo Schubert et al.   TRENDS IN PLANT SCIENCE

Transposons, Genome Size, and Evolutionary Insights in Animals

(2015) Adriana Canapa et al.   CYTOGENETIC AND GENOME RESEARCH

Histone titration against the genome sets the DNA-to-cytoplasm threshold for theXenopusmidblastula transition

(2015) Amanda A. Amodeo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Histone H3 Variants and Their Chaperones During Development and Disease: Contributing to Epigenetic Control

(2014) Dan Filipescu et al.   Annual Review of Cell and Developmental Biology

The Histone Variant H2A.W Defines Heterochromatin and Promotes Chromatin Condensation in Arabidopsis

(2014) Ramesh Yelagandula et al.   CELL

Mislocalization of the Centromeric Histone Variant CenH3/CENP-A in Human Cells Depends on the Chaperone DAXX

(2014) Nicolas Lacoste et al.   MOLECULAR CELL

Mechanism of DNA Methylation-Directed Histone Methylation by KRYPTONITE

(2014) Jiamu Du et al.   MOLECULAR CELL

Epigenetic inheritance uncoupled from sequence-specific recruitment

(2014) K. Ragunathan et al.   SCIENCE

Transcribing through the nucleosome

(2014) Sheila S. Teves et al.   TRENDS IN BIOCHEMICAL SCIENCES

Position-Effect Variegation, Heterochromatin Formation, and Gene Silencing in Drosophila

(2013) S. C. R. Elgin et al.   Cold Spring Harbor Perspectives in Biology

Sequential ChIP-bisulfite sequencing enables direct genome-scale investigation of chromatin and DNA methylation cross-talk

(2012) Arie B. Brinkman et al.   GENOME RESEARCH

Dosage compensation in Drosophila melanogaster: epigenetic fine-tuning of chromosome-wide transcription

(2012) Thomas Conrad et al.   NATURE REVIEWS GENETICS

Loss of the DNA Methyltransferase MET1 Induces H3K9 Hypermethylation at PcG Target Genes and Redistribution of H3K27 Trimethylation to Transposons in Arabidopsis thaliana

(2012) Angelique Deleris et al.   PLoS Genetics

The Linker Region of MacroH2A Promotes Self-association of Nucleosomal Arrays

(2011) Uma M. Muthurajan et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Systems-biology approaches for predicting genomic evolution

(2011) Balázs Papp et al.   NATURE REVIEWS GENETICS

Changes in H2A.Z occupancy and DNA methylation during B-cell lymphomagenesis

(2010) M. L. Conerly et al.   GENOME RESEARCH

The landscape of somatic copy-number alteration across human cancers

(2010) Rameen Beroukhim et al.   NATURE

Establishing, maintaining and modifying DNA methylation patterns in plants and animals

(2010) Julie A. Law et al.   NATURE REVIEWS GENETICS

Genome streamlining and the elemental costs of growth

(2009) Dag O. Hessen et al.   TRENDS IN ECOLOGY & EVOLUTION

SIRT1 Redistribution on Chromatin Promotes Genomic Stability but Alters Gene Expression during Aging

(2008) Philipp Oberdoerffer et al.   CELL

Multimegabase Silencing in Nucleolar Dominance Involves siRNA-Directed DNA Methylation and Specific Methylcytosine-Binding Proteins

(2008) Sasha B. Preuss et al.   MOLECULAR CELL

Histone H2A.Z and DNA methylation are mutually antagonistic chromatin marks

(2008) Daniel Zilberman et al.   NATURE

Polymorphic Y Chromosomes Harbor Cryptic Variation with Manifold Functional Consequences

(2008) B. Lemos et al.   SCIENCE