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A taxonomic note on the genus Prevotella: Description of four novel genera and emended description of the genera Hallella and Xylanibacter

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Prevotella diversity, niches and interactions with the human host

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Hallstatt miners consumed blue cheese and beer during the Iron Age and retained a non-Westernized gut microbiome until the Baroque period

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A versatile genetic toolbox for Prevotella copri enables studying polysaccharide utilization systems

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Mediterranean diet intervention alters the gut microbiome in older people reducing frailty and improving health status: the NU-AGE 1-year dietary intervention across five European countries

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A complete domain-to-species taxonomy for Bacteria and Archaea

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Precise phylogenetic analysis of microbial isolates and genomes from metagenomes using PhyloPhlAn 3.0

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CoproID predicts the source of coprolites and paleofeces using microbiome composition and host DNA content

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Newly Explored Faecalibacterium Diversity Is Connected to Age, Lifestyle, Geography, and Disease

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dbCAN-PUL: a database of experimentally characterized CAZyme gene clusters and their substrates

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Extensive Unexplored Human Microbiome Diversity Revealed by Over 150,000 Genomes from Metagenomes Spanning Age, Geography, and Lifestyle

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Megaphages infect Prevotella and variants are widespread in gut microbiomes

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Strain-Level Diversity in the Gut: The P. copri Case

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Distinct Genetic and Functional Traits of Human Intestinal Prevotella copri Strains Are Associated with Different Habitual Diets

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A Multi-omics Approach to Unraveling the Microbiome-Mediated Effects of Arabinoxylan Oligosaccharides in Overweight Humans

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Surveying Gut Microbiome Research in Africans: Toward Improved Diversity and Representation

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Comparison of extraction methods for recovering ancient microbial DNA from paleofeces

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The Prevotella copri Complex Comprises Four Distinct Clades Underrepresented in Westernized Populations

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The Strange Case of Prevotella copri: Dr. Jekyll or Mr. Hyde?

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Detecting contamination in viromes using ViromeQC

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Human gut microbiome: hopes, threats and promises

(2018) Patrice D Cani   GUT

dbCAN2: a meta server for automated carbohydrate-active enzyme annotation

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Establishment of a Macaca fascicularis gut microbiome gene catalog and comparison with the human, pig, and mouse gut microbiomes

(2018) Xiaoping Li et al.   GigaScience

High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries

(2018) Chirag Jain et al.   Nature Communications

An exploration of Prevotella-rich microbiomes in HIV and men who have sex with men

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Improvement in cardiometabolic risk markers following a multifunctional diet is associated with gut microbial taxa in healthy overweight and obese subjects

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Whole grain-rich diet reduces body weight and systemic low-grade inflammation without inducing major changes of the gut microbiome: a randomised cross-over trial

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Consumption of Two Healthy Dietary Patterns Restored Microbiota Dysbiosis in Obese Patients with Metabolic Dysfunction

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MMseqs2 enables sensitive protein sequence searching for the analysis of massive data sets

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Seasonal cycling in the gut microbiome of the Hadza hunter-gatherers of Tanzania

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Evidence of the Immune Relevance of Prevotella copri , a Gut Microbe, in Patients With Rheumatoid Arthritis

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Gut microbiota dysbiosis contributes to the development of hypertension

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Microbiota-Produced Succinate Improves Glucose Homeostasis via Intestinal Gluconeogenesis

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Prevotella in the gut: choose carefully

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Uniclust databases of clustered and deeply annotated protein sequences and alignments

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Species–function relationships shape ecological properties of the human gut microbiome

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Roary: rapid large-scale prokaryote pan genome analysis

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Dietary Fiber-Induced Improvement in Glucose Metabolism Is Associated with Increased Abundance of Prevotella

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Gut Microbiome: Westernization and the Disappearance of Intestinal Diversity

(2015) Nicola Segata   CURRENT BIOLOGY

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

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High-level adherence to a Mediterranean diet beneficially impacts the gut microbiota and associated metabolome

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The oral and gut microbiomes are perturbed in rheumatoid arthritis and partly normalized after treatment

(2015) Xuan Zhang et al.   NATURE MEDICINE

Subsistence strategies in traditional societies distinguish gut microbiomes

(2015) Alexandra J. Obregon-Tito et al.   Nature Communications

Gut microbiome development along the colorectal adenoma–carcinoma sequence

(2015) Qiang Feng et al.   Nature Communications

Compact graphical representation of phylogenetic data and metadata with GraPhlAn

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Prokka: rapid prokaryotic genome annotation

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An altered intestinal mucosal microbiome in HIV-1 infection is associated with mucosal and systemic immune activation and endotoxemia

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Alterations of the human gut microbiome in liver cirrhosis

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Fast and sensitive protein alignment using DIAMOND

(2014) Benjamin Buchfink et al.   NATURE METHODS

Gut microbiome of the Hadza hunter-gatherers

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Diet, microbiota, and microbial metabolites in colon cancer risk in rural Africans and African Americans

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Diet rapidly and reproducibly alters the human gut microbiome

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The carbohydrate-active enzymes database (CAZy) in 2013

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Expansion of intestinal Prevotella copri correlates with enhanced susceptibility to arthritis

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VarScan 2: Somatic mutation and copy number alteration discovery in cancer by exome sequencing

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SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

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Diversity, stability and resilience of the human gut microbiota

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Structure, function and diversity of the healthy human microbiome

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Human gut microbiome viewed across age and geography

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Fast gapped-read alignment with Bowtie 2

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dbCAN: a web resource for automated carbohydrate-active enzyme annotation

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Linking Long-Term Dietary Patterns with Gut Microbial Enterotypes

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The Human Gut Microbiome: Ecology and Recent Evolutionary Changes

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A human gut microbial gene catalogue established by metagenomic sequencing

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Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa

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Fast and accurate short read alignment with Burrows-Wheeler transform

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