Metabolic versatility of soil microbial communities below the rocks of the hyperarid Dalangtan Playa

METABOLIC: high-throughput profiling of microbial genomes for functional traits, metabolism, biogeochemistry, and community-scale functional networks

(2022) Zhichao Zhou et al.   Microbiome

The Atacama Desert in Northern Chile as an Analog Model of Mars

(2022) Armando Azua-Bustos et al.   Frontiers in Astronomy and Space Sciences

Seasonal Variation of Hypolithic Microbiomes in the Gobi Desert

(2022) Ming-Hui Wu et al.   MICROBIAL ECOLOGY

Unearthing terrestrial extreme microbiomes for searching terrestrial-like life in the Solar System

(2022) Claudia Coleine et al.   TRENDS IN MICROBIOLOGY

Atmospheric chemosynthesis is phylogenetically and geographically widespread and contributes significantly to carbon fixation throughout cold deserts

(2022) Angelique E. Ray et al.   ISME Journal

Microbial diversity and adaptive strategies in the Mars‐like Qaidam Basin, North Tibetan Plateau, China

(2022) Li Liu et al.   Environmental Microbiology Reports

Biosignatures Preserved in Carbonate Nodules from the Western Qaidam Basin, NW China: Implications for Life Detection on Mars

(2022) Yan Chen et al.   ASTROBIOLOGY

Preservation of Organic Matter in Aqueous Deposits and Soils Across the Mars‐Analog Qaidam Basin, NW China: Implications for Biosignature Detection on Mars

(2022) Yan Chen et al.   JOURNAL OF GEOPHYSICAL RESEARCH-PLANETS

Trace gas oxidizers are widespread and active members of soil microbial communities

(2021) Sean K. Bay et al.   Nature Microbiology

Endolithic microbial composition in Helliwell Hills, a newly investigated Mars‐like area in Antarctica

(2021) Claudia Coleine et al.   ENVIRONMENTAL MICROBIOLOGY

Chemosynthetic and photosynthetic bacteria contribute differentially to primary production across a steep desert aridity gradient

(2021) Sean K. Bay et al.   ISME Journal

Salvaging high-quality genomes of microbial species from a meromictic lake using a hybrid sequencing approach

(2021) Yu-Hsiang Chen et al.   Communications Biology

Nitrogen Cycling and Biosignatures in a Hyperarid Mars Analog Environment

(2021) Jianxun Shen et al.   ASTROBIOLOGY

Antarctica as a reservoir of planetary analogue environments

(2021) Alessia Cassaro et al.   EXTREMOPHILES

Multiple energy sources and metabolic strategies sustain microbial diversity in Antarctic desert soils

(2021) Maximiliano Ortiz et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Leave no stone unturned: individually adapted xerotolerant Thaumarchaeota sheltered below the boulders of the Atacama Desert hyperarid core

(2021) Yunha Hwang et al.   Microbiome

Author Correction: A complete domain-to-species taxonomy for Bacteria and Archaea

(2020) Donovan H. Parks et al.   NATURE BIOTECHNOLOGY

Precise phylogenetic analysis of microbial isolates and genomes from metagenomes using PhyloPhlAn 3.0

(2020) Francesco Asnicar et al.   Nature Communications

Hypolithic communities shape soils and organic matter reservoirs in the ice-free landscapes of East Antarctica

(2020) Nikita Mergelov et al.   Scientific Reports

Rock structure drives the taxonomic and functional diversity of endolithic microbial communities in extreme environments

(2020) Emine Ertekin et al.   ENVIRONMENTAL MICROBIOLOGY

The Stress-Responsive Alternative Sigma Factor SigB of Bacillus subtilis and Its Relatives: An Old Friend With New Functions

(2020) Facundo Rodriguez Ayala et al.   Frontiers in Microbiology

Hydrogen-Oxidizing Bacteria Are Abundant in Desert Soils and Strongly Stimulated by Hydration

(2020) Karen Jordaan et al.   mSystems

Interactive Tree Of Life (iTOL) v4: recent updates and new developments

(2019) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

Living at the Extremes: Extremophiles and the Limits of Life in a Planetary Context

(2019) Nancy Merino et al.   Frontiers in Microbiology

Atmospheric carbon monoxide oxidation is a widespread mechanism supporting microbial survival

(2019) Paul R. F. Cordero et al.   ISME Journal

Hybrid metagenomic assembly enables high-resolution analysis of resistance determinants and mobile elements in human microbiomes

(2019) Denis Bertrand et al.   NATURE BIOTECHNOLOGY

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

(2019) Evan Bolyen et al.   NATURE BIOTECHNOLOGY

MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies

(2019) Dongwan D. Kang et al.   PeerJ

Comparison of long-read sequencing technologies in the hybrid assembly of complex bacterial genomes

(2019) Nicola De Maio et al.   Microbial Genomics

GTDB-Tk: a toolkit to classify genomes with the Genome Taxonomy Database

(2019) Pierre-Alain Chaumeil et al.   BIOINFORMATICS

Over-Expression of UV-Damage DNA Repair Genes and Ribonucleic Acid Persistence Contribute to the Resilience of Dried Biofilms of the Desert Cyanobacetrium Chroococcidiopsis Exposed to Mars-Like UV Flux and Long-Term Desiccation

(2019) Claudia Mosca et al.   Frontiers in Microbiology

Dalangtan Saline Playa in a Hyperarid Region on Tibet Plateau-I: Evolution and Environments

(2018) Fanjing Kong et al.   ASTROBIOLOGY

Endolithic microbial habitats as refuges for life in polyextreme environment of the Atacama Desert

(2018) Jacek Wierzchos et al.   CURRENT OPINION IN MICROBIOLOGY

Namib Desert primary productivity is driven by cryptic microbial community N-fixation

(2018) Jean-Baptiste Ramond et al.   Scientific Reports

Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2’s q2-feature-classifier plugin

(2018) Nicholas A. Bokulich et al.   Microbiome

Dalangtan Playa (Qaidam Basin, NW China): Its microbial life and physicochemical characteristics and their astrobiological implications

(2018) Ting Huang et al.   PLoS One

MetaWRAP—a flexible pipeline for genome-resolved metagenomic data analysis

(2018) Gherman V. Uritskiy et al.   Microbiome

metaSPAdes: a new versatile metagenomic assembler

(2017) Sergey Nurk et al.   GENOME RESEARCH

Atmospheric trace gases support primary production in Antarctic desert surface soil

(2017) Mukan Ji et al.   NATURE

Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea

(2017) Robert M Bowers et al.   NATURE BIOTECHNOLOGY

Earth as a Tool for Astrobiology—A European Perspective

(2017) Zita Martins et al.   SPACE SCIENCE REVIEWS

Global Diversity of Desert Hypolithic Cyanobacteria

(2017) Donnabella C. Lacap-Bugler et al.   Frontiers in Microbiology

The western Qaidam Basin as a potential Martian environmental analogue: An overview

(2017) Angélica Anglés et al.   JOURNAL OF GEOPHYSICAL RESEARCH-PLANETS

Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life

(2017) Donovan H. Parks et al.   Nature Microbiology

Deblur Rapidly Resolves Single-Nucleotide Community Sequence Patterns

(2017) Amnon Amir et al.   mSystems

Nearing the cold-arid limits of microbial life in permafrost of an upper dry valley, Antarctica

(2016) Jacqueline Goordial et al.   ISME Journal

RecA: Regulation and Mechanism of a Molecular Search Engine

(2016) Jason C. Bell et al.   TRENDS IN BIOCHEMICAL SCIENCES

Phylogenetic and Functional Substrate Specificity for Endolithic Microbial Communities in Hyper-Arid Environments

(2016) Alexander Crits-Christoph et al.   Frontiers in Microbiology

Taxonomic and Functional Diversity of Soil and Hypolithic Microbial Communities in Miers Valley, McMurdo Dry Valleys, Antarctica

(2016) Sean T. S. Wei et al.   Frontiers in Microbiology

A Decade of Biochemical and Structural Studies of the DNA Repair Machinery of Deinococcus radiodurans: Major Findings, Functional and Mechanistic Insight and Challenges

(2016) Joanna Timmins et al.   Computational and Structural Biotechnology Journal

Temporal dynamics of hot desert microbial communities reveal structural and functional responses to water input

(2016) Alacia Armstrong et al.   Scientific Reports

HydDB: A web tool for hydrogenase classification and analysis

(2016) Dan Søndergaard et al.   Scientific Reports

MaxBin 2.0: an automated binning algorithm to recover genomes from multiple metagenomic datasets

(2015) Yu-Wei Wu et al.   BIOINFORMATICS

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

(2015) Donovan H. Parks et al.   GENOME RESEARCH

Genomic and metagenomic surveys of hydrogenase distribution indicate H2 is a widely utilised energy source for microbial growth and survival

(2015) Chris Greening et al.   ISME Journal

Persistence of the dominant soil phylumAcidobacteriaby trace gas scavenging

(2015) Chris Greening et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Improved Bacterial 16S rRNA Gene (V4 and V4-5) and Fungal Internal Transcribed Spacer Marker Gene Primers for Microbial Community Surveys

(2015) William Walters et al.   mSystems

Sulfate-bearing deposits at Dalangtan Playa and their implication for the formation and preservation of martian salts

(2014) W. G. Kong et al.   AMERICAN MINERALOGIST

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

(2014) Lam-Tung Nguyen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Binning metagenomic contigs by coverage and composition

(2014) Johannes Alneberg et al.   NATURE METHODS

Metagenomic evidence for metabolism of trace atmospheric gases by high-elevation desert Actinobacteria

(2014) Ryan C. Lynch et al.   Frontiers in Microbiology

Hypolithic and soil microbial community assembly along an aridity gradient in the Namib Desert

(2013) Francesca Stomeo et al.   EXTREMOPHILES

Dynamic cyanobacterial response to hydration and dehydration in a desert biological soil crust

(2013) Lara Rajeev et al.   ISME Journal

Evidence for successional development in Antarctic hypolithic bacterial communities

(2013) Thulani P Makhalanyane et al.   ISME Journal

The high elevation Dry Valleys in Antarctica as analog sites for subsurface ice on Mars

(2013) J.L. Heldmann et al.   PLANETARY AND SPACE SCIENCE

Colonization patterns of soil microbial communities in the Atacama Desert

(2013) Alexander Crits-Christoph et al.   Microbiome

Hypolithic microbial communities: between a rock and a hard place

(2012) Yuki Chan et al.   ENVIRONMENTAL MICROBIOLOGY

Life at the hyperarid margin: novel bacterial diversity in arid soils of the Atacama Desert, Chile

(2012) Julia W. Neilson et al.   EXTREMOPHILES

Microbial colonization and controls in dryland systems

(2012) Stephen B. Pointing et al.   NATURE REVIEWS MICROBIOLOGY

Domain-level identification and quantification of relative prokaryotic cell abundance in microbial communities by Micro-FTIR spectroscopy

(2011) Motoko Igisu et al.   Environmental Microbiology Reports

Astrobiology through the Ages of Mars: The Study of Terrestrial Analogues to Understand the Habitability of Mars

(2010) Alberto G. Fairén et al.   ASTROBIOLOGY

Hidden Markov model speed heuristic and iterative HMM search procedure

(2010) L Steven Johnson et al.   BMC BIOINFORMATICS

Hypolithic Microbial Community of Quartz Pavement in the High-Altitude Tundra of Central Tibet

(2010) Fiona K. Y. Wong et al.   MICROBIAL ECOLOGY

Hypolithic Cyanobacteria Supported Mainly by Fog in the Coastal Range of the Atacama Desert

(2010) Armando Azúa-Bustos et al.   MICROBIAL ECOLOGY

On the rocks: the microbiology of Antarctic Dry Valley soils

(2010) S. Craig Cary et al.   NATURE REVIEWS MICROBIOLOGY

Micro-FTIR spectroscopic signatures of Bacterial lipids in Proterozoic microfossils

(2009) Motoko Igisu et al.   PRECAMBRIAN RESEARCH

Influence of dew on biomass and photosystem II activity of cyanobacterial crusts in the Hopq Desert, northwest China

(2009) Benqiang Rao et al.   SOIL BIOLOGY & BIOCHEMISTRY

Regulatory and DNA Repair Genes Contribute to the Desiccation Resistance of Sinorhizobium meliloti Rm1021

(2008) J. L. Humann et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY