Atmospheric carbon monoxide oxidation is a widespread mechanism supporting microbial survival

Two Chloroflexi classes independently evolved the ability to persist on atmospheric hydrogen and carbon monoxide

(2019) Zahra F. Islam et al.   ISME Journal

Widespread soil bacterium that oxidizes atmospheric methane

(2019) Alexander T. Tveit et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A global atlas of the dominant bacteria found in soil

(2018) Manuel Delgado-Baquerizo et al.   SCIENCE

Comparative proteomics reveals signature metabolisms of exponentially growing and stationary phase marine bacteria

(2017) Saraladevi Muthusamy et al.   ENVIRONMENTAL MICROBIOLOGY

Aerobic carbon monoxide oxidation in the course of growth of a hyperthermophilic archaeon, Sulfolobus sp. ETSY

(2017) T. G. Sokolova et al.   MICROBIOLOGY

Atmospheric trace gases support primary production in Antarctic desert surface soil

(2017) Mukan Ji et al.   NATURE

Perchlorate-Coupled Carbon Monoxide (CO) Oxidation: Evidence for a Plausible Microbe-Mediated Reaction in Martian Brines

(2017) Marisa R. Myers et al.   Frontiers in Microbiology

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Perseus computational platform for comprehensive analysis of (prote)omics data

(2016) Stefka Tyanova et al.   NATURE METHODS

HydDB: A web tool for hydrogenase classification and analysis

(2016) Dan Søndergaard et al.   Scientific Reports

Genomic and metagenomic surveys of hydrogenase distribution indicate H2 is a widely utilised energy source for microbial growth and survival

(2015) Chris Greening et al.   ISME Journal

Persistence of the dominant soil phylumAcidobacteriaby trace gas scavenging

(2015) Chris Greening et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Carbon monoxide as a metabolic energy source for extremely halophilic microbes: Implications for microbial activity in Mars regolith

(2015) Gary M. King   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Breathing air to save energy - new insights into the ecophysiological role of high-affinity [NiFe]-hydrogenase in Streptomyces avermitilis

(2015) Quentin Liot et al.   MicrobiologyOpen

Atmospheric Hydrogen Scavenging: from Enzymes to Ecosystems

(2014) Chris Greening et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Thermomicrobium carboxidum sp. nov., and Thermorudis peleae gen. nov., sp. nov., carbon monoxide-oxidizing bacteria isolated from geothermally heated biofilms

(2014) C. E. King et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Description of Thermogemmatispora carboxidivorans sp. nov., a carbon-monoxide-oxidizing member of the class Ktedonobacteria isolated from a geothermally heated biofilm, and analysis of carbon monoxide oxidation by members of the class Ktedonobacteria

(2014) C. E. King et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Insights into the posttranslational assembly of the Mo-, S- and Cu-containing cluster in the active site of CO dehydrogenase of Oligotropha carboxidovorans

(2014) Astrid M. Pelzmann et al.   JOURNAL OF BIOLOGICAL INORGANIC CHEMISTRY

Fast and sensitive protein alignment using DIAMOND

(2014) Benjamin Buchfink et al.   NATURE METHODS

The Growth and Survival of Mycobacterium smegmatis Is Enhanced by Co-Metabolism of Atmospheric H2

(2014) Chris Greening et al.   PLoS One

A soil actinobacterium scavenges atmospheric H2 using two membrane-associated, oxygen-dependent [NiFe] hydrogenases

(2014) C. Greening et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

An obligately aerobic soil bacterium activates fermentative hydrogen production to survive reductive stress during hypoxia

(2014) M. Berney et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Land-use influences the distribution and activity of high affinity CO-oxidizing bacteria associated to type I-coxL genotype in soil

(2014) Liliana Quiza et al.   Frontiers in Microbiology

Three decades of global methane sources and sinks

(2013) Stefanie Kirschke et al.   Nature Geoscience

Physiological and Metabolic Effects of Carbon Monoxide Oxidation in the Model Marine Bacterioplankton Ruegeria pomeroyi DSS-3

(2012) Michael Cunliffe   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Proteomic Analysis of Survival of Rhodococcus jostii RHA1 during Carbon Starvation

(2012) Marianna A. Patrauchan et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data

(2012) Evguenia Kopylova et al.   BIOINFORMATICS

Carbon monoxide utilization of an extremely oligotrophic bacterium, Rhodococcus erythropolis N9T-4

(2012) Takanori Yano et al.   JOURNAL OF BIOSCIENCE AND BIOENGINEERING

NGS QC Toolkit: A Toolkit for Quality Control of Next Generation Sequencing Data

(2012) Ravi K. Patel et al.   PLoS One

The phylogenetic distribution and ecological role of carbon monoxide oxidation in the genus Burkholderia

(2011) Carolyn F. Weber et al.   FEMS MICROBIOLOGY ECOLOGY

Proteomic insights into the lifestyle of an environmentally relevant marine bacterium

(2011) Joseph Alexander Christie-Oleza et al.   ISME Journal

Photobiogeochemical cycling of carbon monoxide in the southeastern Beaufort Sea in spring and autumn

(2011) Huixiang Xie et al.   LIMNOLOGY AND OCEANOGRAPHY

IMG: the integrated microbial genomes database and comparative analysis system

(2011) V. M. Markowitz et al.   NUCLEIC ACIDS RESEARCH

Purification and characterization of carbon monoxide dehydrogenase from the aerobic hyperthermophilic archaeon Aeropyrum pernix

(2010) Hiroshi Nishimura et al.   FISHERIES SCIENCE

Methyloferula stellata gen. nov., sp. nov., an acidophilic, obligately methanotrophic bacterium that possesses only a soluble methane monooxygenase

(2010) A. V. Vorobev et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Correlating carbon monoxide oxidation with cox genes in the abundant Marine Roseobacter Clade

(2010) Michael Cunliffe   ISME Journal

The Sequence Read Archive

(2010) R. Leinonen et al.   NUCLEIC ACIDS RESEARCH

Unique Flexibility in Energy Metabolism Allows Mycobacteria to Combat Starvation and Hypoxia

(2010) Michael Berney et al.   PLoS One

Streptomycetes contributing to atmospheric molecular hydrogen soil uptake are widespread and encode a putative high-affinity [NiFe]-hydrogenase

(2009) Philippe Constant et al.   ENVIRONMENTAL MICROBIOLOGY

Water stress impacts on bacterial carbon monoxide oxidation on recent volcanic deposits

(2009) Carolyn F Weber et al.   ISME Journal

Aerobic carboxydotrophy under extremely haloalkaline conditions in Alkalispirillum/Alkalilimnicola strains isolated from soda lakes

(2009) D. Yu. Sorokin et al.   MICROBIOLOGY-SGM

Complete Genome Sequence of the Aerobic CO-Oxidizing Thermophile Thermomicrobium roseum

(2009) Dongying Wu et al.   PLoS One

The tropospheric cycle of H2: a critical review

(2009) D. H. Ehhalt et al.   TELLUS SERIES B-CHEMICAL AND PHYSICAL METEOROLOGY

Atmospheric CO and Hydrogen Uptake and CO Oxidizer Phylogeny for Miyake-jima, Japan Volcanic Deposits

(2008) Gary M. King et al.   MICROBES AND ENVIRONMENTS

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

(2008) Jürgen Cox et al.   NATURE BIOTECHNOLOGY