Phylogenetic and Functional Substrate Specificity for Endolithic Microbial Communities in Hyper-Arid Environments

Metagenomic analysis provides insights into functional capacity in a hyperarid desert soil niche community

(2015) Surendra Vikram et al.   ENVIRONMENTAL MICROBIOLOGY

Adaptation strategies of endolithic chlorophototrophs to survive the hyperarid and extreme solar radiation environment of the Atacama Desert

(2015) Jacek Wierzchos et al.   Frontiers in Microbiology

Finding and identifying the viral needle in the metagenomic haystack: trends and challenges

(2015) Hayssam Soueidan et al.   Frontiers in Microbiology

Marine chemical ecology in benthic environments

(2014) Melany P. Puglisi et al.   NATURAL PRODUCT REPORTS

The spatial structures of hypolithic communities in the Dry Valleys of East Antarctica

(2014) Asunción de los Ríos et al.   POLAR BIOLOGY

Diverse metabolic and stress-tolerance pathways in chasmoendolithic and soil communities of Miers Valley, McMurdo Dry Valleys, Antarctica

(2014) Sean T. S. Wei et al.   POLAR BIOLOGY

Kraken: ultrafast metagenomic sequence classification using exact alignments

(2014) Derrick E Wood et al.   GENOME BIOLOGY

PhyloSift: phylogenetic analysis of genomes and metagenomes

(2014) Aaron E. Darling et al.   PeerJ

MaxBin: an automated binning method to recover individual genomes from metagenomes using an expectation-maximization algorithm

(2014) Yu-Wei Wu et al.   Microbiome

Microbial diversity and the presence of algae in halite endolithic communities are correlated to atmospheric moisture in the hyper-arid zone of the Atacama Desert

(2013) Courtney K. Robinson et al.   ENVIRONMENTAL MICROBIOLOGY

antiSMASH 2.0—a versatile platform for genome mining of secondary metabolite producers

(2013) Kai Blin et al.   NUCLEIC ACIDS RESEARCH

Functional ecology of an Antarctic Dry Valley

(2013) Y. Chan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Desiccation stress and tolerance in green algae: consequences for ultrastructure, physiological and molecular mechanisms

(2013) Andreas Holzinger et al.   Frontiers in Plant Science

IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth

(2012) Y. Peng et al.   BIOINFORMATICS

Hypolithic microbial communities: between a rock and a hard place

(2012) Yuki Chan et al.   ENVIRONMENTAL MICROBIOLOGY

Abiotic factors influence microbial diversity in permanently cold soil horizons of a maritime-associated Antarctic Dry Valley

(2012) Francesca Stomeo et al.   FEMS MICROBIOLOGY ECOLOGY

The chemical ecology of cyanobacteria

(2012) Pedro N. Leão et al.   NATURAL PRODUCT REPORTS

Microbial colonization and controls in dryland systems

(2012) Stephen B. Pointing et al.   NATURE REVIEWS MICROBIOLOGY

Metabolic Reconstruction for Metagenomic Data and Its Application to the Human Microbiome

(2012) Sahar Abubucker et al.   PLoS Computational Biology

HMMER web server: interactive sequence similarity searching

(2011) R. D. Finn et al.   NUCLEIC ACIDS RESEARCH

EMIRGE: reconstruction of full-length ribosomal genes from microbial community short read sequencing data

(2011) Christopher S Miller et al.   GENOME BIOLOGY

Metabolism and function of phenazines in bacteria: impacts on the behavior of bacteria in the environment and biotechnological processes

(2010) Leland S. Pierson et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Prodigal: prokaryotic gene recognition and translation initiation site identification

(2010) Doug Hyatt et al.   BMC BIOINFORMATICS

Microbial colonization of Ca-sulfate crusts in the hyperarid core of the Atacama Desert: implications for the search for life on Mars

(2010) J. WIERZCHOS et al.   Geobiology

Hypolithic Cyanobacteria Supported Mainly by Fog in the Coastal Range of the Atacama Desert

(2010) Armando Azúa-Bustos et al.   MICROBIAL ECOLOGY

Molecular Characterization and Geological Microenvironment of a Microbial Community Inhabiting Weathered Receding Shale Cliffs

(2010) Charles S. Cockell et al.   MICROBIAL ECOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

On the rocks: the microbiology of Antarctic Dry Valley soils

(2010) S. Craig Cary et al.   NATURE REVIEWS MICROBIOLOGY

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Distribution and abiotic influences on hypolithic microbial communities in an Antarctic Dry Valley

(2010) Don A. Cowan et al.   POLAR BIOLOGY

A Cryptoendolithic Community in Volcanic Glass

(2009) Aude Herrera et al.   ASTROBIOLOGY

Circos: An information aesthetic for comparative genomics

(2009) M. Krzywinski et al.   GENOME RESEARCH

Trehalose Metabolism: From Osmoprotection to Signaling

(2009) Gabriel Iturriaga et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Endolithic Microbial Colonization of Limestone in a High-altitude Arid Environment

(2009) Fiona K. Y. Wong et al.   MICROBIAL ECOLOGY

Bacterial competition: surviving and thriving in the microbial jungle

(2009) Michael E. Hibbing et al.   NATURE REVIEWS MICROBIOLOGY

Highly specialized microbial diversity in hyper-arid polar desert

(2009) S. B. Pointing et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

The metagenomics RAST server – a public resource for the automatic phylogenetic and functional analysis of metagenomes

(2008) F Meyer et al.   BMC BIOINFORMATICS

The RAST Server: Rapid Annotations using Subsystems Technology

(2008) Ramy K Aziz et al.   BMC GENOMICS

Sources of edaphic cyanobacterial diversity in the Dry Valleys of Eastern Antarctica

(2008) Susanna A Wood et al.   ISME Journal

Protein oxidation: key to bacterial desiccation resistance?

(2008) James K Fredrickson et al.   ISME Journal

Phosphorus Deprivation Responses and Phosphonate Utilization in a Thermophilic Synechococcus sp. from Microbial Mats

(2008) M. M. Adams et al.   JOURNAL OF BACTERIOLOGY

DEWFALL AS A WATER SOURCE FREQUENTLY ACTIVATES THE ENDOLITHIC CYANOBACTERIAL COMMUNITIES IN THE GRANITES OF TAYLOR VALLEY, ANTARCTICA1

(2008) Burkhard Büdel et al.   JOURNAL OF PHYCOLOGY