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Title
Transcription Factor Dynamics: One Molecule at a Time
Authors
Keywords
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Journal
Annual Review of Cell and Developmental Biology
Volume 39, Issue 1, Pages 277-305
Publisher
Annual Reviews
Online
2023-08-05
DOI
10.1146/annurev-cellbio-022823-013847
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- (2022) Hinrich Boeger Annual Review of Biochemistry
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- (2022) Jorge Trojanowski et al. MOLECULAR CELL
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- (2022) Tamar Gera et al. eLife
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- (2022) Lorenzo Rinaldi et al. Science Advances
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- (2022) Xiaona Tang et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
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- (2022) Timo Kuhn et al. Nature Communications
- Mechanisms governing target search and binding dynamics of hypoxia-inducible factors
- (2022) Yu Chen et al. eLife
- Imaging the unimaginable: leveraging signal generation of CRISPR-Cas for sensitive genome imaging
- (2022) Charlotte Van Tricht et al. TRENDS IN BIOTECHNOLOGY
- Speed–Specificity Trade-Offs in the Transcription Factors Search for Their Genomic Binding Sites
- (2021) Tamar Jana et al. TRENDS IN GENETICS
- What do Transcription Factors Interact With?
- (2021) Haining Chen et al. JOURNAL OF MOLECULAR BIOLOGY
- An intrinsically disordered region-mediated confinement state contributes to the dynamics and function of transcription factors
- (2021) David A. Garcia et al. MOLECULAR CELL
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- (2021) David A Garcia et al. NUCLEIC ACIDS RESEARCH
- Mechanical Regulation of Transcription: Recent Advances
- (2021) Kaustubh Wagh et al. TRENDS IN CELL BIOLOGY
- MINFLUX nanometer-scale 3D imaging and microsecond-range tracking on a common fluorescence microscope
- (2021) Roman Schmidt et al. Nature Communications
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- (2021) Matteo Mazzocca et al. BIOCHEMICAL SOCIETY TRANSACTIONS
- Dynamic imaging of nascent RNA reveals general principles of transcription dynamics and stochastic splice site selection
- (2021) Yihan Wan et al. CELL
- Genome folding through loop extrusion by SMC complexes
- (2021) Iain F. Davidson et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Single molecule tracking and analysis framework including theory-predicted parameter settings
- (2021) Timo Kuhn et al. Scientific Reports
- Spatiotemporal coordination of transcription preinitiation complex assembly in live cells
- (2021) Vu Q. Nguyen et al. MOLECULAR CELL
- Altering transcription factor binding reveals comprehensive transcriptional kinetics of a basic gene
- (2021) Achim P Popp et al. NUCLEIC ACIDS RESEARCH
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- (2021) Jee Min Kim et al. eLife
- Phase separation in transcription factor dynamics and chromatin organization
- (2021) Kaustubh Wagh et al. CURRENT OPINION IN STRUCTURAL BIOLOGY
- Order through disorder: The role of intrinsically disordered regions in transcription factor binding specificity
- (2021) Sagie Brodsky et al. CURRENT OPINION IN STRUCTURAL BIOLOGY
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- (2021) Jonathan B. Grimm et al. NATURE METHODS
- MINFLUX nanoscopy delivers 3D multicolor nanometer resolution in cells
- (2020) Klaus C. Gwosch et al. NATURE METHODS
- Nucleosomal proofreading of activator–promoter interactions
- (2020) Robert Shelansky et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Transcription in Living Cells: Molecular Mechanisms of Bursting
- (2020) Joseph Rodriguez et al. Annual Review of Biochemistry
- Gene Regulation in and out of Equilibrium
- (2020) Felix Wong et al. Annual Review of Biophysics
- Intrinsically Disordered Regions Direct Transcription Factor In Vivo Binding Specificity
- (2020) Sagie Brodsky et al. MOLECULAR CELL
- Transcription Factors and DNA Play Hide and Seek
- (2020) David M. Suter TRENDS IN CELL BIOLOGY
- Nucleated transcriptional condensates amplify gene expression
- (2020) Ming-Tzo Wei et al. NATURE CELL BIOLOGY
- Phase-Separated Transcriptional Condensates Accelerate Target-Search Process Revealed by Live-Cell Single-Molecule Imaging
- (2020) Samantha Kent et al. Cell Reports
- A matter of time: Using dynamics and theory to uncover mechanisms of transcriptional bursting
- (2020) Nicholas C. Lammers et al. CURRENT OPINION IN CELL BIOLOGY
- Advances in visualizing transcription factor – DNA interactions
- (2020) Rachel M. Price et al. GENOME
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- (2019) Sandy L. Klemm et al. NATURE REVIEWS GENETICS
- Single-molecule imaging of the transcription factor SRF reveals prolonged chromatin-binding kinetics upon cell stimulation
- (2019) Lisa Hipp et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Single-molecule dynamics and genome-wide transcriptomics reveal that NF-kB (p65)-DNA binding times can be decoupled from transcriptional activation
- (2019) Andrea Callegari et al. PLoS Genetics
- Single nucleosome imaging reveals loose genome chromatin networks via active RNA polymerase II
- (2019) Ryosuke Nagashima et al. JOURNAL OF CELL BIOLOGY
- Live‐cell imaging reveals the interplay between transcription factors, nucleosomes, and bursting
- (2019) Benjamin T Donovan et al. EMBO JOURNAL
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- (2019) Leighton Core et al. GENES & DEVELOPMENT
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- (2019) Judith F. Kribelbauer et al. Annual Review of Cell and Developmental Biology
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- (2017) Karen Clauß et al. NUCLEIC ACIDS RESEARCH
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- (2014) Zhe Liu et al. eLife
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- (2013) T. B. Miranda et al. CANCER RESEARCH
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- (2013) Lars Grøntved et al. EMBO JOURNAL
- Single-molecule imaging of transcription factor binding to DNA in live mammalian cells
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- (2013) Ty C. Voss et al. NATURE REVIEWS GENETICS
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- (2013) I. I. Cisse et al. SCIENCE
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- (2012) François Spitz et al. NATURE REVIEWS GENETICS
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- (2012) Davide Mazza et al. NUCLEIC ACIDS RESEARCH
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- (2012) P. Hammar et al. SCIENCE
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- Dynamic Exchange at Regulatory Elements during Chromatin Remodeling Underlies Assisted Loading Mechanism
- (2011) Ty C. Voss et al. CELL
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- (2011) Andrew J Bannister et al. CELL RESEARCH
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- (2010) Kim I Mortensen et al. NATURE METHODS
- Transcription Dynamics
- (2009) Gordon L. Hager et al. MOLECULAR CELL
- Transient Anomalous Diffusion of Telomeres in the Nucleus of Mammalian Cells
- (2009) I. Bronstein et al. PHYSICAL REVIEW LETTERS
- HaloTag: A Novel Protein Labeling Technology for Cell Imaging and Protein Analysis
- (2008) Georgyi V. Los et al. ACS Chemical Biology
- Kinetic proofreading of gene activation by chromatin remodeling
- (2008) R. Blossey et al. HFSP Journal
- Dynamic multiple-target tracing to probe spatiotemporal cartography of cell membranes
- (2008) Arnauld Sergé et al. NATURE METHODS
- Highly inclined thin illumination enables clear single-molecule imaging in cells
- (2008) Makio Tokunaga et al. NATURE METHODS
- Robust single-particle tracking in live-cell time-lapse sequences
- (2008) Khuloud Jaqaman et al. NATURE METHODS
- High-density mapping of single-molecule trajectories with photoactivated localization microscopy
- (2008) Suliana Manley et al. NATURE METHODS
- Regulation of TATA-binding protein dynamics in living yeast cells
- (2008) R. O. Sprouse et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Concurrent Fast and Slow Cycling of a Transcriptional Activator at an Endogenous Promoter
- (2008) T. S. Karpova et al. SCIENCE
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