Gene Co-Expression Network Analysis Reveals the Correlation Patterns Among Genes in Euryhaline Adaptation of Crassostrea gigas

Cosplicing network analysis of mammalian brain RNA-Seq data utilizing WGCNA and Mantel correlations

(2015) Ovidiu D. Iancu et al.   Frontiers in Genetics

Proteomic Basis of Stress Responses in the Gills of the Pacific Oyster Crassostrea gigas

(2014) Yang Zhang et al.   JOURNAL OF PROTEOME RESEARCH

Co-expression network analysis identifies transcriptional modules in the mouse liver

(2014) Wei Liu et al.   MOLECULAR GENETICS AND GENOMICS

Rat Hepatocytes Weighted Gene Co-Expression Network Analysis Identifies Specific Modules and Hub Genes Related to Liver Regeneration after Partial Hepatectomy

(2014) Yun Zhou et al.   PLoS One

Comparative Transcriptome Analysis of Two Oysters, Crassostrea gigas and Crassostrea hongkongensis Provides Insights into Adaptation to Hypo-Osmotic Conditions

(2014) Xuelin Zhao et al.   PLoS One

Transcriptomic and iTRAQ proteomic approaches reveal novel short-term hyperosmotic stress responsive proteins in the gill of the Japanese eel (Anguilla japonica)

(2013) William Ka Fai Tse et al.   Journal of Proteomics

Sequencing-based gene network analysis provides a core set of gene resource for understanding thermal adaptation in Zhikong scallopChlamys farreri

(2013) X. Fu et al.   Molecular Ecology Resources

Integrative mouse and human mRNA studies using WGCNA nominates novel candidate genes involved in the pathogenesis of major depressive disorder

(2013) Karim Malki et al.   PHARMACOGENOMICS

Genome and Transcriptome Analyses Provide Insight into the Euryhaline Adaptation Mechanism of Crassostrea gigas

(2013) Jie Meng et al.   PLoS One

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

The oyster genome reveals stress adaptation and complexity of shell formation

(2012) Guofan Zhang et al.   NATURE

Network Analysis of Oyster Transcriptome Revealed a Cascade of Cellular Responses during Recovery after Heat Shock

(2012) Lingling Zhang et al.   PLoS One

Transcriptomic Responses to Salinity Stress in the Pacific Oyster Crassostrea gigas

(2012) Xuelin Zhao et al.   PLoS One

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

The histone methyltransferase Setd8 acts in concert with c-Myc and is required to maintain skin

(2011) Iwona Driskell et al.   EMBO JOURNAL

Environmentally induced oxidative stress in aquatic animals

(2010) Volodymyr I. Lushchak   AQUATIC TOXICOLOGY

Glutamate, aspartate and nucleotide transporters in the SLC17 family form four main phylogenetic clusters: evolution and tissue expression

(2010) Smitha Sreedharan et al.   BMC GENOMICS

Use and exchange of genetic resources in molluscan aquaculture

(2009) Ximing Guo   Reviews in Aquaculture

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS

A Systems Level Analysis of Transcriptional Changes in Alzheimer's Disease and Normal Aging

(2008) J. A. Miller et al.   JOURNAL OF NEUROSCIENCE