Sequencing-based gene network analysis provides a core set of gene resource for understanding thermal adaptation in Zhikong scallopChlamys farreri

Identification and characterization of four ferritin subunits involved in immune defense of the Yesso scallop (Patinopecten yessoensis)

(2013) Yueyue Zhang et al.   FISH & SHELLFISH IMMUNOLOGY

Transcriptome Sequencing of Zhikong Scallop (Chlamys farreri) and Comparative Transcriptomic Analysis with Yesso Scallop (Patinopecten yessoensis)

(2013) Shan Wang et al.   PLoS One

Transcriptional Response of the Mussel Mytilus galloprovincialis (Lam.) following Exposure to Heat Stress and Copper

(2013) Alessandro Negri et al.   PLoS One

Overexpression of SERBP1 (Plasminogen activator inhibitor 1 RNA binding protein) in human breast cancer is correlated with favourable prognosis

(2012) Nuran Bektas Serce et al.   BMC CANCER

Investigating the molecular basis of local adaptation to thermal stress: population differences in gene expression across the transcriptome of the copepod Tigriopus californicus

(2012) Sean D Schoville et al.   BMC EVOLUTIONARY BIOLOGY

Gene Coexpression Networks in Human Brain Identify Epigenetic Modifications in Alcohol Dependence

(2012) I. Ponomarev et al.   JOURNAL OF NEUROSCIENCE

Network Analysis of Oyster Transcriptome Revealed a Cascade of Cellular Responses during Recovery after Heat Shock

(2012) Lingling Zhang et al.   PLoS One

Hsp90α/β associates with the GSK3β/axin1/phospho-β-catenin complex in the human MCF-7 epithelial breast cancer model

(2011) Leanne C. Cooper et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Digital gene expression for non-model organisms

(2011) L. Z. Hong et al.   GENOME RESEARCH

Human Coronavirus-Induced Neuronal Programmed Cell Death Is Cyclophilin D Dependent and Potentially Caspase Dispensable

(2011) D. J. Favreau et al.   JOURNAL OF VIROLOGY

Critical Role for Voltage-Dependent Anion Channel 2 in Infectious Bursal Disease Virus-Induced Apoptosis in Host Cells via Interaction with VP5

(2011) Z. Li et al.   JOURNAL OF VIROLOGY

The Gln32Lys Polymorphism in HSP22 of Zhikong Scallop Chlamys farreri Is Associated with Heat Tolerance

(2011) Chuanyan Yang et al.   PLoS One

Effects of Elevated Temperature and Carbon Dioxide on the Growth and Survival of Larvae and Juveniles of Three Species of Northwest Atlantic Bivalves

(2011) Stephanie C. Talmage et al.   PLoS One

Stacks : Building and Genotyping Loci De Novo From Short-Read Sequences

(2011) Julian M. Catchen et al.   G3-Genes Genomes Genetics

Cytoscape 2.8: new features for data integration and network visualization

(2010) M. E. Smoot et al.   BIOINFORMATICS

Response of Mytilus galloprovincialis (L.) to increasing seawater temperature and to marteliosis: Metabolic and physiological parameters

(2010) Andreas Anestis et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY A-MOLECULAR & INTEGRATIVE PHYSIOLOGY

The proteomic response of the mussel congeners Mytilus galloprovincialis and M. trossulus to acute heat stress: implications for thermal tolerance limits and metabolic costs of thermal stress

(2010) L. Tomanek et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Transcriptomic responses to heat stress in invasive and native blue mussels (genus Mytilus): molecular correlates of invasive success

(2010) B. L. Lockwood et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

HSP90 at the hub of protein homeostasis: emerging mechanistic insights

(2010) Mikko Taipale et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

High-Throughput SuperSAGE for Digital Gene Expression Analysis of Multiple Samples Using Next Generation Sequencing

(2010) Hideo Matsumura et al.   PLoS One

Promoter Complexity and Tissue-Specific Expression of Stress Response Components in Mytilus galloprovincialis, a Sessile Marine Invertebrate Species

(2010) Chrysa Pantzartzi et al.   PLoS Computational Biology

Growth, survival and immune activity of scallops, Chlamys farreri Jones et Preston, compared between suspended and bottom culture in Haizhou Bay, China

(2009) Zonghe Yu et al.   AQUACULTURE RESEARCH

SOAP2: an improved ultrafast tool for short read alignment

(2009) R. Li et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Effects of temperature on gene expression in embryos of the coral Montastraea faveolata

(2009) Christian R Voolstra et al.   BMC GENOMICS

Transcriptome Profiling of Selectively Bred Pacific Oyster Crassostrea gigas Families that Differ in Tolerance of Heat Shock

(2009) R. Paul Lang et al.   MARINE BIOTECHNOLOGY

Early molecular responses of coral larvae to hyperthermal stress

(2009) MAURICIO RODRIGUEZ-LANETTY et al.   MOLECULAR ECOLOGY

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

Trithorax requires Hsp90 for maintenance of active chromatin at sites of gene expression

(2009) M. Tariq et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Transcriptional expression levels of cell stress marker genes in the Pacific oyster Crassostrea gigas exposed to acute thermal stress

(2008) Émilie Farcy et al.   CELL STRESS & CHAPERONES

Activities of the chaperonin containing TCP-1 (CCT): implications for cell cycle progression and cytoskeletal organisation.

(2008) Karen I. Brackley et al.   CELL STRESS & CHAPERONES

Functional organization of the transcriptome in human brain

(2008) Michael C Oldham et al.   NATURE NEUROSCIENCE

High-throughput functional annotation and data mining with the Blast2GO suite

(2008) S. Gotz et al.   NUCLEIC ACIDS RESEARCH