Learning to predict RNA sequence expressions from whole slide images with applications for search and classification

Bias reduction in representation of histopathology images using deep feature selection

(2022) Azam Asilian Bidgoli et al.   Scientific Reports

TNMplot.com: A Web Tool for the Comparison of Gene Expression in Normal, Tumor and Metastatic Tissues

(2021) Áron Bartha et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Deep learning predicts gene expression as an intermediate data modality to identify susceptibility patterns in Mycobacterium tuberculosis infected Diversity Outbred mice

(2021) Thomas E. Tavolara et al.   EBioMedicine

Effective gene expression prediction from sequence by integrating long-range interactions

(2021) Žiga Avsec et al.   NATURE METHODS

Selection on adaptive and maladaptive gene expression plasticity during thermal adaptation to urban heat islands

(2021) Shane C. Campbell-Staton et al.   Nature Communications

Automated deep-learning system for Gleason grading of prostate cancer using biopsies: a diagnostic study

(2020) Wouter Bulten et al.   LANCET ONCOLOGY

A deep learning model to predict RNA-Seq expression of tumours from whole slide images

(2020) Benoît Schmauch et al.   Nature Communications

Integrating spatial gene expression and breast tumour morphology via deep learning

(2020) Bryan He et al.   Nature Biomedical Engineering

Yottixel – An Image Search Engine for Large Archives of Histopathology Whole Slide Images

(2020) Shivam Kalra et al.   MEDICAL IMAGE ANALYSIS

Pan-Renal Cell Carcinoma classification and survival prediction from histopathology images using deep learning

(2019) Sairam Tabibu et al.   Scientific Reports

Immune infiltration in nasopharyngeal carcinoma based on gene expression

(2019) Meng-Si Luo et al.   MEDICINE

Classification and mutation prediction from non–small cell lung cancer histopathology images using deep learning

(2018) Nicolas Coudray et al.   NATURE MEDICINE

Next-Generation Sequencing in Oncology: Genetic Diagnosis, Risk Prediction and Cancer Classification

(2017) Rick Kamps et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

variancePartition: interpreting drivers of variation in complex gene expression studies

(2016) Gabriel E. Hoffman et al.   BMC BIOINFORMATICS

Multi-target regression via input space expansion: treating targets as inputs

(2016) Eleftherios Spyromitros-Xioufis et al.   MACHINE LEARNING

Understanding Pathologic Variants of Renal Cell Carcinoma: Distilling Therapeutic Opportunities from Biologic Complexity

(2015) Brian Shuch et al.   EUROPEAN UROLOGY