Integrated Analysis of microRNA and RNA-Seq Reveals Phenolic Acid Secretion Metabolism in Continuous Cropping of Polygonatum odoratum

Fungal Indicators of Sensitivity and Resistance to Long-Term Maize Monoculture: A Culture-Independent Approach

(2022) Agnieszka Wolińska et al.   Frontiers in Microbiology

Transcriptome and miRNA sequencing analyses reveal the regulatory mechanism of α-linolenic acid biosynthesis in Paeonia rockii

(2022) Jiarui Zheng et al.   FOOD RESEARCH INTERNATIONAL

Combined Analysis of the Metabolome and Transcriptome to Explore Heat Stress Responses and Adaptation Mechanisms in Celery (Apium graveolens L.)

(2022) Mengyao Li et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

The Methanol Extract of Polygonatum odoratum Ameliorates Colitis by Improving Intestinal Short-Chain Fatty Acids and Gas Production to Regulate Microbiota Dysbiosis in Mice

(2022) Xuewei Ye et al.   Frontiers in Nutrition

Integrated miRNA-mRNA analysis reveals the roles of miRNAs in the replanting benefit of Achyranthes bidentata roots

(2021) Yan Hui Yang et al.   Scientific Reports

Physiological and transcriptomic analyses to reveal underlying phenolic acid action in consecutive monoculture problem of Polygonatum odoratum

(2021) Xianzhi Ni et al.   BMC PLANT BIOLOGY

Effects of 2,4-di-tert-butylphenol at different concentrations on soil functionality and microbial community structure in the Lanzhou lily rhizosphere

(2021) Jiajia Cui et al.   APPLIED SOIL ECOLOGY

Combined Analysis of the Metabolome and Transcriptome Identified Candidate Genes Involved in Phenolic Acid Biosynthesis in the Leaves of Cyclocarya paliurus

(2020) Weida Lin et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Transcriptome analysis of activated charcoal-induced growth promotion of wheat seedlings in tissue culture

(2020) Fu-shuang Dong et al.   BMC GENETICS

Simultaneous TALEN-mediated knockout of chrysanthemum DMC1 genes confers male and female sterility

(2020) Harue Shinoyama et al.   Scientific Reports

Transcriptome analysis of atemoya pericarp elucidates the role of polysaccharide metabolism in fruit ripening and cracking after harvest

(2019) Jingjing Chen et al.   BMC PLANT BIOLOGY

Soil acidification in continuously cropped tobacco alters bacterial community structure and diversity via the accumulation of phenolic acids

(2019) Yuxiang Bai et al.   Scientific Reports

psRNATarget: a plant small RNA target analysis server (2017 release)

(2018) Xinbin Dai et al.   NUCLEIC ACIDS RESEARCH

Effects of phenolic acids from ginseng rhizosphere on soil fungi structure, richness and diversity in consecutive monoculturing of ginseng

(2018) Zibo Li et al.   SAUDI JOURNAL OF BIOLOGICAL SCIENCES

Polygonatum odoratum Polysaccharides Modulate Gut Microbiota and Mitigate Experimentally Induced Obesity in Rats

(2018) Yan Wang et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Analysis of Selected Phenolic Compounds in Organic, Pesticide-Free, Conventional Rice (Oryza sativa L.) Using LC-ESI-MS/MS

(2018) Mayakrishnan Prabakaran et al.   MOLECULES

Rhizospheric soil and root endogenous fungal diversity and composition in response to continuous Panax notoginseng cropping practices

(2017) Yong Tan et al.   MICROBIOLOGICAL RESEARCH

Transcriptome analysis reveals metabolic alteration due to consecutive monoculture and abiotic stress stimuli in Rehamannia glutinosa Libosch

(2017) Yunhe Tian et al.   PLANT CELL REPORTS

Phyto-rhizoremediation of polychlorinated biphenyl contaminated soils: An outlook on plant-microbe beneficial interactions

(2017) Lorenzo Vergani et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Transcriptome profiling in leaves representing aboveground parts of apple replant disease affected Malus domestica ‘M26’ plants

(2017) Stefan Weiß et al.   SCIENTIA HORTICULTURAE

Integrated mRNA and microRNA transcriptome analysis reveals miRNA regulation in response to PVA in potato

(2017) Yanlin Li et al.   Scientific Reports

Metabolic and transcriptional alternations for defense by interfering OsWRKY62 and OsWRKY76 transcriptions in rice

(2017) Xiaoxing Liang et al.   Scientific Reports

Insights into the Mechanism of Proliferation on the Special Microbes Mediated by Phenolic Acids in the Radix pseudostellariae Rhizosphere under Continuous Monoculture Regimes

(2017) Hongmiao Wu et al.   Frontiers in Plant Science

saRNA-guided Ago2 targets the RITA complex to promoters to stimulate transcription

(2016) Victoria Portnoy et al.   CELL RESEARCH

Identification and Characterization of Salvia miltiorrhizain miRNAs in Response to Replanting Disease

(2016) Haihua Zhang et al.   PLoS One

MicroRNAs activate gene transcription epigenetically as an enhancer trigger

(2016) Min Xiao et al.   RNA Biology

Effects of long-term continuous cropping on soil nematode community and soil condition associated with replant problem in strawberry habitat

(2016) Xingyue Li et al.   Scientific Reports

Mixed Phenolic Acids Mediated Proliferation of Pathogens Talaromyces helicus and Kosakonia sacchari in Continuously Monocultured Radix pseudostellariae Rhizosphere Soil

(2016) Hongmiao Wu et al.   Frontiers in Microbiology

Comparative Transcriptome Analysis between Broccoli (Brassica oleracea var. italica) and Wild Cabbage (Brassica macrocarpa Guss.) in Response to Plasmodiophora brassicae during Different Infection Stages

(2016) Xiaoli Zhang et al.   Frontiers in Plant Science

Accumulation of Phenolic Compounds and Expression Profiles of Phenolic Acid Biosynthesis-Related Genes in Developing Grains of White, Purple, and Red Wheat

(2016) Dongyun Ma et al.   Frontiers in Plant Science

Improving the Production of L-Phenylalanine by Identifying Key Enzymes Through Multi-Enzyme Reaction System in Vitro

(2016) Dongqin Ding et al.   Scientific Reports

De novo sequencing and assembly analysis of transcriptome in the Sodom apple (Calotropis gigantea)

(2015) Nkatha G. Muriira et al.   BMC GENOMICS

The oxidative pentose phosphate pathway in the haloarchaeonHaloferax volcaniiinvolves a novel type of glucose-6-phosphate dehydrogenase - The archaeal Zwischenferment

(2015) Andreas Pickl et al.   FEBS LETTERS

Oxidative Modification of miR-184 Enables It to Target Bcl-xL and Bcl-w

(2015) Jian-Xun Wang et al.   MOLECULAR CELL

Plant-microbe rhizosphere interactions mediated by Rehmannia glutinosa root exudates under consecutive monoculture

(2015) Linkun Wu et al.   Scientific Reports

Analysis of Neurotransmitter Tissue Content of Drosophila melanogaster in Different Life Stages

(2014) Madelaine E. Denno et al.   ACS Chemical Neuroscience

Identification and characterization of miRNAome in root, stem, leaf and tuber developmental stages of potato (Solanum tuberosum L.) by high-throughput sequencing

(2014) Nisha Lakhotia et al.   BMC PLANT BIOLOGY

Ag+ as a More Effective Elicitor for Production of Tanshinones than Phenolic Acids in Salvia miltiorrhiza Hairy Roots

(2014) Bingcong Xing et al.   MOLECULES

Plant-Soil Feedbacks and Soil Sickness: From Mechanisms to Application in Agriculture

(2013) Li-Feng Huang et al.   JOURNAL OF CHEMICAL ECOLOGY

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

(2013) Brian J Haas et al.   Nature Protocols

Transcriptomic analysis of UV-treated rice leaves reveals UV-induced phytoalexin biosynthetic pathways and their regulatory networks in rice

(2013) Hye Lin Park et al.   PHYTOCHEMISTRY

Plant phenolics: Recent advances on their biosynthesis, genetics, and ecophysiology

(2013) Véronique Cheynier et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Shikimate and Phenylalanine Biosynthesis in the Green Lineage

(2013) Takayuki Tohge et al.   Frontiers in Plant Science

miREvo: an integrative microRNA evolutionary analysis platform for next-generation sequencing experiments

(2012) Ming Wen et al.   BMC BIOINFORMATICS

Identification of Autotoxic Compounds in Fibrous Roots of Rehmannia (Rehmannia glutinosa Libosch.)

(2012) Zhen-Fang Li et al.   PLoS One

Characterization of and host response to tyramine substituted-hyaluronan enriched fascia extracellular matrix

(2011) LiKang Chin et al.   JOURNAL OF MATERIALS SCIENCE-MATERIALS IN MEDICINE

Integrated Profiling of MicroRNAs and mRNAs: MicroRNAs Located on Xq27.3 Associate with Clear Cell Renal Cell Carcinoma

(2011) Liang Zhou et al.   PLoS One

Phenolics and Plant Allelopathy

(2010) Zhao-Hui Li et al.   MOLECULES

Gene ontology analysis for RNA-seq: accounting for selection bias

(2010) Matthew D Young et al.   GENOME BIOLOGY