Single-cell sequencing reveals the evolution of immune molecules across multiple vertebrate species

Integrative single-cell RNA-seq and ATAC-seq analysis of myogenic differentiation in pig

(2023) Shufang Cai et al.   BMC BIOLOGY

Spatial proteogenomics reveals distinct and evolutionarily conserved hepatic macrophage niches

(2022) Martin Guilliams et al.   CELL

Single-cell RNA-seq landscape midbrain cell responses to red spotted grouper nervous necrosis virus infection

(2021) Qing Wang et al.   PLoS Pathogens

Efficient and precise single-cell reference atlas mapping with Symphony

(2021) Joyce B. Kang et al.   Nature Communications

Regulatory T Cell Development

(2020) Peter A. Savage et al.   Annual Review of Immunology

A single-cell and single-nucleus RNA-Seq toolbox for fresh and frozen human tumors

(2020) Michal Slyper et al.   NATURE MEDICINE

Leukocyte Immunoglobulin-Like Receptors (LILRs) on Human Neutrophils: Modulators of Infection and Immunity

(2020) Alexander L. Lewis Marffy et al.   Frontiers in Immunology

Recent Advances on Phagocytic B Cells in Teleost Fish

(2020) Liting Wu et al.   Frontiers in Immunology

Transcriptome sequencing supports a conservation of macrophage polarization in fish

(2020) Annelieke S. Wentzel et al.   Scientific Reports

Transcription Factor Bhlhe40 in Immunity and Autoimmunity

(2020) Melissa E. Cook et al.   TRENDS IN IMMUNOLOGY

Memory B-cells and Long-Lived Plasma Cells

(2019) Lavinia Ionescu et al.   TRANSPLANTATION

CD33 (Siglec-3) Inhibitory Function: Role in the NKG2D/DAP10 Activating Pathway

(2019) Trinidad Hernández-Caselles et al.   Journal of Immunology Research

Comprehensive Integration of Single-Cell Data

(2019) Tim Stuart et al.   CELL

The Metabolic Signature of Macrophage Responses

(2019) Antonella Viola et al.   Frontiers in Immunology

Flip the coin: IL-7 and IL-7R in health and disease

(2019) João T. Barata et al.   NATURE IMMUNOLOGY

Metabolic landscape of the tumor microenvironment at single cell resolution

(2019) Zhengtao Xiao et al.   Nature Communications

CXCL16 positively correlated with M2-macrophage infiltration, enhanced angiogenesis, and poor prognosis in thyroid cancer

(2019) Min Joo Kim et al.   Scientific Reports

IRF-7 Is a Critical Regulator of Type 2 Innate Lymphoid Cells in Allergic Airway Inflammation

(2019) Juan He et al.   Cell Reports

Integrating single-cell transcriptomic data across different conditions, technologies, and species

(2018) Andrew Butler et al.   NATURE BIOTECHNOLOGY

Single-cell transcriptomics of 20 mouse organs creates a Tabula Muris

(2018) et al.   NATURE

The ectonucleotidases CD39 and CD73: Novel checkpoint inhibitor targets

(2017) Bertrand Allard et al.   IMMUNOLOGICAL REVIEWS

Dissecting hematopoietic and renal cell heterogeneity in adult zebrafish at single-cell resolution using RNA sequencing

(2017) Qin Tang et al.   JOURNAL OF EXPERIMENTAL MEDICINE

Complex heatmaps reveal patterns and correlations in multidimensional genomic data

(2016) Zuguang Gu et al.   BIOINFORMATICS

Polarization of immune responses in fish: The ‘macrophages first’ point of view

(2016) Geert F. Wiegertjes et al.   MOLECULAR IMMUNOLOGY

The Transcription Factor KLF2 Restrains CD4 + T Follicular Helper Cell Differentiation

(2015) June-Yong Lee et al.   IMMUNITY

Understanding the Mysterious M2 Macrophage through Activation Markers and Effector Mechanisms

(2015) Tamás Rőszer   MEDIATORS OF INFLAMMATION

Human caspase-4 mediates noncanonical inflammasome activation against gram-negative bacterial pathogens

(2015) Cierra N. Casson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Critical role for syndecan-4 in dendritic cell migration during development of allergic airway inflammation

(2015) Tobias Polte et al.   Nature Communications

A whole-genome RNAi screen uncovers a novel role for human potassium channels in cell killing by the parasite Entamoeba histolytica

(2015) Chelsea Marie et al.   Scientific Reports

B Cells in Teleost Fish Act as Pivotal Initiating APCs in Priming Adaptive Immunity: An Evolutionary Perspective on the Origin of the B-1 Cell Subset and B7 Molecules

(2014) L.-y. Zhu et al.   JOURNAL OF IMMUNOLOGY

MCL1 Enhances the Survival of CD8+Memory T Cells after Viral Infection

(2014) Jingang Gui et al.   JOURNAL OF VIROLOGY

A comparative encyclopedia of DNA elements in the mouse genome

(2014) Feng Yue et al.   NATURE

Evolution of Innate Immunity: Clues from Invertebrates via Fish to Mammals

(2014) Kurt Buchmann   Frontiers in Immunology

FCRL3 promotes TLR9-induced B-cell activation and suppresses plasma cell differentiation

(2013) Fu Jun Li et al.   EUROPEAN JOURNAL OF IMMUNOLOGY

Transcription factor EBF1 is essential for the maintenance of B cell identity and prevention of alternative fates in committed cells

(2013) Robert Nechanitzky et al.   NATURE IMMUNOLOGY

The location of splenic NKT cells favours their rapid activation by blood-borne antigen

(2012) Patricia Barral et al.   EMBO JOURNAL

Novel functions of murine B1 cells: Active phagocytic and microbicidal abilities

(2012) Jixin Gao et al.   EUROPEAN JOURNAL OF IMMUNOLOGY

Immune system and immune responses in fish and their role in comparative immunity study: A model for higher organisms

(2012) Pradipta R. Rauta et al.   IMMUNOLOGY LETTERS

Complement receptor type 1 (CR1, CD35) is a potent inhibitor of B-cell functions in rheumatoid arthritis patients

(2012) M. Kremlitzka et al.   INTERNATIONAL IMMUNOLOGY

clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters

(2012) Guangchuang Yu et al.   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY

Molecular Characterization of Circulating Plasma Cells in Patients with Active Systemic Lupus Erythematosus

(2012) Patricia L. Lugar et al.   PLoS One

Evolution of lymphoid tissues

(2012) Thomas Boehm et al.   TRENDS IN IMMUNOLOGY

Arachidonate 5-Lipoxygenase Establishes Adaptive Humoral Immunity by Controlling Primary B Cells and Their Cognate T-Cell Help

(2011) Tsutomu Nagashima et al.   AMERICAN JOURNAL OF PATHOLOGY

Fish T cells: Recent advances through genomics

(2011) Kerry J. Laing et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

Conservation of characteristics and functions of CD4 positive lymphocytes in a teleost fish

(2011) Hideaki Toda et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

CD1d and CD1c Expression in Human B Cells Is Regulated by Activation and Retinoic Acid Receptor Signaling

(2011) L. L. Allan et al.   JOURNAL OF IMMUNOLOGY

Pivotal Advance: Peritoneal cavity B-1 B cells have phagocytic and microbicidal capacities and present phagocytosed antigen to CD4+ T cells

(2011) D. Parra et al.   JOURNAL OF LEUKOCYTE BIOLOGY

The chemokine CXCL12 regulates monocyte-macrophage differentiation and RUNX3 expression

(2010) L. Sanchez-Martin et al.   BLOOD

Defining the immunological phenotype of Fc receptor-like B (FCRLB) deficient mice: Confounding role of the inhibitory FcγRIIb

(2010) Keiji Masuda et al.   CELLULAR IMMUNOLOGY

FcR-Like 2 Inhibition of B Cell Receptor-Mediated Activation of B Cells

(2010) T. A. Jackson et al.   JOURNAL OF IMMUNOLOGY

Regulation of Adaptive Immunity by the Innate Immune System

(2010) A. Iwasaki et al.   SCIENCE

Chemokine CXCL16 Regulates Neutrophil and Macrophage Infiltration into Injured Muscle, Promoting Muscle Regeneration

(2009) Liping Zhang et al.   AMERICAN JOURNAL OF PATHOLOGY

Phagocytic B cells in a reptile

(2009) L. M. Zimmerman et al.   Biology Letters

Phagocytosis by B-cells and neutrophils in Atlantic salmon (Salmo salar L.) and Atlantic cod (Gadus morhua L.)

(2009) Hanne S. Øverland et al.   FISH & SHELLFISH IMMUNOLOGY

NCBI BLAST: a better web interface

(2008) M. Johnson et al.   NUCLEIC ACIDS RESEARCH