Warmer temperatures favor slower-growing bacteria in natural marine communities

Nutrient supply controls the linkage between species abundance and ecological interactions in marine bacterial communities

(2022) Tianjiao Dai et al.   Nature Communications

The Effects of Temperature on Cellular Physiology

(2022) Benjamin D. Knapp et al.   Annual Review of Biophysics

Fast-growing species shape the evolution of reef corals

(2022) Alexandre C. Siqueira et al.   Nature Communications

Down-regulation of the bacterial protein biosynthesis machinery in response to weeks, years, and decades of soil warming

(2022) Andrea Söllinger et al.   Science Advances

Estimating maximal microbial growth rates from cultures, metagenomes, and single cells via codon usage patterns

(2021) Jake L. Weissman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Metagenomic analysis reveals global-scale patterns of ocean nutrient limitation

(2021) Lucas J. Ustick et al.   SCIENCE

Mechanistic model of nutrient uptake explains dichotomy between marine oligotrophic and copiotrophic bacteria

(2021) Noele Norris et al.   PLoS Computational Biology

Higher temperatures generically favour slower-growing bacterial species in multispecies communities

(2020) Simon Lax et al.   Nature Ecology & Evolution

Dynamics of coastal bacterial community average ribosomal RNA operon copy number reflect its response and sensitivity to ammonium and phosphate

(2020) Tianjiao Dai et al.   ENVIRONMENTAL POLLUTION

Tara Oceans: towards global ocean ecosystems biology

(2020) Shinichi Sunagawa et al.   NATURE REVIEWS MICROBIOLOGY

Dynamics and functional diversity of the smallest phytoplankton on the Northeast US Shelf

(2020) Bethany L. Fowler et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Interpretations of Environmental Microbial Community Studies Are Biased by the Selected 16S rRNA (Gene) Amplicon Sequencing Pipeline

(2020) Daniel Straub et al.   Frontiers in Microbiology

High Frequency Multi-Year Variability in Baltic Sea Microbial Plankton Stocks and Activities

(2019) Carina Bunse et al.   Frontiers in Microbiology

Scientists’ warning to humanity: microorganisms and climate change

(2019) Ricardo Cavicchioli et al.   NATURE REVIEWS MICROBIOLOGY

Mortality causes universal changes in microbial community composition

(2019) Clare I. Abreu et al.   Nature Communications

Global Trends in Marine Plankton Diversity across Kingdoms of Life

(2019) Federico M. Ibarbalz et al.   CELL

Rhythmicity of coastal marine picoeukaryotes, bacteria and archaea despite irregular environmental perturbations

(2018) Stefan Lambert et al.   ISME Journal

Oceanographic boundaries constrain microbial diversity gradients in the South Pacific Ocean

(2018) Eric J. Raes et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Testing the metabolic theory of ecology with marine bacteria: different temperature sensitivity of major phylogenetic groups during the spring phytoplankton bloom

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Marine archaeal dynamics and interactions with the microbial community over 5 years from surface to seafloor

(2017) Alma E Parada et al.   ISME Journal

Microbial functional trait of rRNA operon copy numbers increases with organic levels in anaerobic digesters

(2017) Linwei Wu et al.   ISME Journal

Annual community patterns are driven by seasonal switching between closely related marine bacteria

(2017) Christopher S Ward et al.   ISME Journal

Microdiversification in genome-streamlined ubiquitous freshwater Actinobacteria

(2017) Stefan M Neuenschwander et al.   ISME Journal

Long-term pattern and magnitude of soil carbon feedback to the climate system in a warming world

(2017) J. M. Melillo et al.   SCIENCE

Marine Bacterioplankton Seasonal Succession Dynamics

(2017) Carina Bunse et al.   TRENDS IN MICROBIOLOGY

Growth Rates of Microbes in the Oceans

(2016) David L. Kirchman   Annual Review of Marine Science

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Response of marine bacterioplankton pH homeostasis gene expression to elevated CO2

(2016) Carina Bunse et al.   Nature Climate Change

Bacterioplankton Biogeography of the Atlantic Ocean: A Case Study of the Distance-Decay Relationship

(2016) Mathias Milici et al.   Frontiers in Microbiology

Exploiting rRNA operon copy number to investigate bacterial reproductive strategies

(2016) Benjamin R. K. Roller et al.   Nature Microbiology

Low diversity of planktonic bacteria in the tropical ocean

(2016) Mathias Milici et al.   Scientific Reports

Disentangling seasonal bacterioplankton population dynamics by high-frequency sampling

(2015) Markus V. Lindh et al.   ENVIRONMENTAL MICROBIOLOGY

Decreases in average bacterial community rRNA operon copy number during succession

(2015) Diana R Nemergut et al.   ISME Journal

Microbiomes in light of traits: A phylogenetic perspective

(2015) J. B. H. Martiny et al.   SCIENCE

Structure and function of the global ocean microbiome

(2015) S. Sunagawa et al.   SCIENCE

Microbial resource utilization traits and trade-offs: implications for community structure, functioning, and biogeochemical impacts at present and in the future

(2015) Elena Litchman et al.   Frontiers in Microbiology

Long-term forest soil warming alters microbial communities in temperate forest soils

(2015) Kristen M. DeAngelis et al.   Frontiers in Microbiology

Implications of streamlining theory for microbial ecology

(2014) Stephen J Giovannoni et al.   ISME Journal

The world-wide ‘fast-slow’ plant economics spectrum: a traits manifesto

(2014) Peter B. Reich   JOURNAL OF ECOLOGY

Prochlorococcus: the structure and function of collective diversity

(2014) Steven J. Biller et al.   NATURE REVIEWS MICROBIOLOGY

rrnDB: improved tools for interpreting rRNA gene abundance in bacteria and archaea and a new foundation for future development

(2014) Steven F. Stoddard et al.   NUCLEIC ACIDS RESEARCH

Persistence and Change in Community Composition of Reef Corals through Present, Past, and Future Climates

(2014) Peter J. Edmunds et al.   PLoS One

Can we detect oceanic biodiversity hotspots from space?

(2013) Silvia De Monte et al.   ISME Journal

Temporal variability and coherence of euphotic zone bacterial communities over a decade in the Southern California Bight

(2013) Cheryl-Emiliane T Chow et al.   ISME Journal

Present and future global distributions of the marine Cyanobacteria Prochlorococcus and Synechococcus

(2013) P. Flombaum et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Macroecological patterns of marine bacteria on a global scale

(2012) Anthony S. Amend et al.   JOURNAL OF BIOGEOGRAPHY

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

A Global Pattern of Thermal Adaptation in Marine Phytoplankton

(2012) M. K. Thomas et al.   SCIENCE

Climate Change Impacts on Marine Ecosystems

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Transitions in bacterial communities along the 2000 km salinity gradient of the Baltic Sea

(2011) Daniel PR Herlemann et al.   ISME Journal

Fast stable restricted maximum likelihood and marginal likelihood estimation of semiparametric generalized linear models

(2010) Simon N. Wood   JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES B-STATISTICAL METHODOLOGY

The Systemic Imprint of Growth and Its Uses in Ecological (Meta)Genomics

(2010) Sara Vieira-Silva et al.   PLoS Genetics

Annual changes of bacterial mortality due to viruses and protists in an oligotrophic coastal environment (NW Mediterranean)

(2009) Julia A. Boras et al.   ENVIRONMENTAL MICROBIOLOGY

The genomic basis of trophic strategy in marine bacteria

(2009) F. M. Lauro et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Microbial Engines That Drive Earth's Biogeochemical Cycles

(2008) P. G. Falkowski et al.   SCIENCE