Chromosome-scale genome assembly of a natural diploid kiwifruit (Actinidia chinensis var. deliciosa)

Transcriptome analysis and postharvest behavior of the kiwifruit ‘Actinidia deliciosa’ reveal the role of ethylene-related phytohormones during fruit ripening

(2021) Juan Salazar et al.   Tree Genetics & Genomes

Oxford Nanopore Sequencing: New opportunities for plant genomics?

(2020) Kathryn Dumschott et al.   JOURNAL OF EXPERIMENTAL BOTANY

Changes in the carotenoids profile of two yellow-fleshed kiwifruit cultivars during storage

(2020) Hui Xia et al.   POSTHARVEST BIOLOGY AND TECHNOLOGY

Kiwifruit Genome Database (KGD): a comprehensive resource for kiwifruit genomics

(2020) Junyang Yue et al.   Horticulture Research

Dynamic Changes of Phenolic Compounds and Their Associated Gene Expression Profiles Occurring during Fruit Development and Ripening of the Donghong Kiwifruit

(2020) Dong Liang et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Chromosome-scale genome assembly of kiwifruit Actinidia eriantha with single-molecule sequencing and chromatin interaction mapping

(2019) Wei Tang et al.   GigaScience

A high-quality Actinidia chinensis (kiwifruit) genome

(2019) Haolin Wu et al.   Horticulture Research

OUP accepted manuscript

(2018)   BIOINFORMATICS

A manually annotated Actinidia chinensis var. chinensis (kiwifruit) genome highlights the challenges associated with draft genomes and gene prediction in plants

(2018) Sarah M. Pilkington et al.   BMC GENOMICS

A kiwifruit (Actinidia deliciosa ) R2R3-MYB transcription factor modulates chlorophyll and carotenoid accumulation

(2018) Charles Ampomah-Dwamena et al.   NEW PHYTOLOGIST

The hybrid non-ethylene and ethylene ripening response in kiwifruit (Actinidia chinensis) is associated with differential regulation of MADS-box transcription factors

(2015) Peter A. McAtee et al.   BMC PLANT BIOLOGY

StringTie enables improved reconstruction of a transcriptome from RNA-seq reads

(2015) Mihaela Pertea et al.   NATURE BIOTECHNOLOGY

HISAT: a fast spliced aligner with low memory requirements

(2015) Daehwan Kim et al.   NATURE METHODS

Pfam: the protein families database

(2013) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Draft genome of the kiwifruit Actinidia chinensis

(2013) Shengxiong Huang et al.   Nature Communications

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

Hi–C: A comprehensive technique to capture the conformation of genomes

(2012) Jon-Matthew Belton et al.   METHODS

MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity

(2012) Y. Wang et al.   NUCLEIC ACIDS RESEARCH

SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler

(2012) Ruibang Luo et al.   GigaScience

A fast, lock-free approach for efficient parallel counting of occurrences of k-mers

(2011) Guillaume Marçais et al.   BIOINFORMATICS

Fruit development of the diploid kiwifruit, Actinidia chinensis 'Hort16A'

(2011) Annette C Richardson et al.   BMC PLANT BIOLOGY

Dissecting the role of climacteric ethylene in kiwifruit (Actinidia chinensis) ripening using a 1-aminocyclopropane-1-carboxylic acid oxidase knockdown line

(2011) Ross G. Atkinson et al.   JOURNAL OF EXPERIMENTAL BOTANY

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Morphological and cytotype variation of wild kiwifruit (Actinidia chinensis complex) along an altitudinal and longitudinal gradient in central-west China

(2010) DAWEI LI et al.   BOTANICAL JOURNAL OF THE LINNEAN SOCIETY

Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments

(2008) Brian J Haas et al.   GENOME BIOLOGY