Kiwifruit Genome Database (KGD): a comprehensive resource for kiwifruit genomics

Chromosome-scale genome assembly of kiwifruit Actinidia eriantha with single-molecule sequencing and chromatin interaction mapping

(2019) Wei Tang et al.   GigaScience

A high-quality Actinidia chinensis (kiwifruit) genome

(2019) Haolin Wu et al.   Horticulture Research

A manually annotated Actinidia chinensis var. chinensis (kiwifruit) genome highlights the challenges associated with draft genomes and gene prediction in plants

(2018) Sarah M. Pilkington et al.   BMC GENOMICS

The nutritional and health attributes of kiwifruit: a review

(2018) David P. Richardson et al.   EUROPEAN JOURNAL OF NUTRITION

A Y-Encoded Suppressor of Feminization Arose via Lineage-Specific Duplication of a Cytokinin Response Regulator in Kiwifruit

(2018) Takashi Akagi et al.   PLANT CELL

Molecular Evolution of GDP-D-Mannose Epimerase (GME), a Key Gene in Plant Ascorbic Acid Biosynthesis

(2018) Junjie Tao et al.   Frontiers in Plant Science

Cucurbit Genomics Database (CuGenDB): a central portal for comparative and functional genomics of cucurbit crops

(2018) Yi Zheng et al.   NUCLEIC ACIDS RESEARCH

InterPro in 2019: improving coverage, classification and access to protein sequence annotations

(2018) Alex L Mitchell et al.   NUCLEIC ACIDS RESEARCH

Whole transcriptome sequencing of Pseudomonas syringae pv. actinidiae-infected kiwifruit plants reveals species-specific interaction between long non-coding RNA and coding genes

(2017) Zupeng Wang et al.   Scientific Reports

Development and Application of Transcriptome-Derived Microsatellites in Actinidia eriantha (Actinidiaceae)

(2017) Rui Guo et al.   Frontiers in Plant Science

iTAK: A Program for Genome-wide Prediction and Classification of Plant Transcription Factors, Transcriptional Regulators, and Protein Kinases

(2016) Yi Zheng et al.   Molecular Plant

Chado use case: storing genomic, genetic and breeding data of Rosaceae and Gossypium crops in Chado

(2016) Sook Jung et al.   Database-The Journal of Biological Databases and Curation

Kiwifruit Information Resource (KIR): a comparative platform for kiwifruit genomics

(2015) Junyang Yue et al.   Database-The Journal of Biological Databases and Curation

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Fast and sensitive protein alignment using DIAMOND

(2014) Benjamin Buchfink et al.   NATURE METHODS

Draft genome of the kiwifruit Actinidia chinensis

(2013) Shengxiong Huang et al.   Nature Communications

Tripal v1.1: a standards-based toolkit for construction of online genetic and genomic databases

(2013) Lacey-Anne Sanderson et al.   Database-The Journal of Biological Databases and Curation

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity

(2012) Y. Wang et al.   NUCLEIC ACIDS RESEARCH

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY