Deciphering the role of NETosis-related signatures in the prognosis and immunotherapy of soft-tissue sarcoma using machine learning

Identification of anoikis-related molecular patterns to define tumor microenvironment and predict immunotherapy response and prognosis in soft-tissue sarcoma

(2023) Lin Qi et al.   Frontiers in Pharmacology

Use of Machine Learning Consensus Clustering to Identify Distinct Subtypes of Black Kidney Transplant Recipients and Associated Outcomes

(2022) Charat Thongprayoon et al.   JAMA Surgery

Soft Tissue Sarcoma, Version 2.2022, NCCN Clinical Practice Guidelines in Oncology

(2022) Margaret von Mehren et al.   Journal of the National Comprehensive Cancer Network

Cross-Talk of Multiple Types of RNA Modification Regulators Uncovers the Tumor Microenvironment and Immune Infiltrates in Soft Tissue Sarcoma

(2022) Lin Qi et al.   Frontiers in Immunology

A signature for pan-cancer prognosis based on neutrophil extracellular traps

(2022) Yi Zhang et al.   Journal for ImmunoTherapy of Cancer

A new thinking: deciphering the aberrance and clinical implication of copper-death signatures in clear cell renal cell carcinoma

(2022) Aimin Jiang et al.   Cell and Bioscience

Opposing immune and genetic mechanisms shape oncogenic programs in synovial sarcoma

(2021) Livnat Jerby-Arnon et al.   NATURE MEDICINE

Immunotherapy for sarcomas: new frontiers and unveiled opportunities

(2021) Harsimrat Kaur Birdi et al.   Journal for ImmunoTherapy of Cancer

Molecular Characterization of Residual Bladder Cancer after Neoadjuvant Pembrolizumab

(2021) Andrea Necchi et al.   EUROPEAN UROLOGY

Neutrophil extracellular traps promote gastric cancer metastasis by inducing epithelial‑mesenchymal transition

(2021) Tong Zhu et al.   INTERNATIONAL JOURNAL OF MOLECULAR MEDICINE

oncoPredict: an R package for predicting in vivo or cancer patient drug response and biomarkers from cell line screening data

(2021) Danielle Maeser et al.   BRIEFINGS IN BIOINFORMATICS

Soft-tissue sarcoma in adults: An update on the current state of histiotype-specific management in an era of personalized medicine

(2020) Adriana C. Gamboa et al.   CA-A CANCER JOURNAL FOR CLINICIANS

m6A regulator-mediated methylation modification patterns and tumor microenvironment infiltration characterization in gastric cancer

(2020) Bo Zhang et al.   Molecular Cancer

A novel peptidylarginine deiminase 4 (PAD4) inhibitor BMS-P5 blocks formation of neutrophil extracellular traps and delays progression of multiple myeloma

(2020) Marina Li et al.   MOLECULAR CANCER THERAPEUTICS

PIK3CA mutation and CNV status and post-chemoradiotherapy survival in patients with cervical cancer

(2020) Kevin Martell et al.   GYNECOLOGIC ONCOLOGY

The role of neutrophil extracellular traps in cancer metastasis

(2020) William Wang et al.   Clinical and Translational Medicine

Sarcomas in the United States: Recent trends and a call for improved staging

(2019) Michele M. Gage et al.   Oncotarget

Distinct Immune Cell Populations Define Response to Anti-PD-1 Monotherapy and Anti-PD-1/Anti-CTLA-4 Combined Therapy

(2019) Tuba N. Gide et al.   CANCER CELL

Evaluation of the functional effects of genetic variants‒missense and nonsense SNPs, indels and copy number variations‒in the gene encoding human deoxyribonuclease I potentially implicated in autoimmunity

(2019) Misuzu Ueki et al.   Scientific Reports

NETosis, complement, and coagulation: a triangular relationship

(2018) Cynthia M. de Bont et al.   Cellular & Molecular Immunology

Unifying cancer and normal RNA sequencing data from different sources

(2018) Qingguo Wang et al.   Scientific Data

TIP: A web server for resolving tumor immunophenotype profiling

(2018) Liwen Xu et al.   CANCER RESEARCH

TGFβ attenuates tumour response to PD-L1 blockade by contributing to exclusion of T cells

(2018) Sanjeev Mariathasan et al.   NATURE

The immune contexture in cancer prognosis and treatment

(2017) Wolf H. Fridman et al.   Nature Reviews Clinical Oncology

Tumor-Induced NETosis as a Risk Factor for Metastasis and Organ Failure

(2016) J. Cedervall et al.   CANCER RESEARCH

A Landscape of Pharmacogenomic Interactions in Cancer

(2016) Francesco Iorio et al.   CELL

Soft tissue sarcoma of the extremities: pending questions on surgery and radiotherapy

(2016) Fien Hoefkens et al.   Radiation Oncology

Neutrophil Extracellular Traps Accumulate in Peripheral Blood Vessels and Compromise Organ Function in Tumor-Bearing Animals

(2015) J. Cedervall et al.   CANCER RESEARCH

Pivotal role for the mTOR pathway in the formation of neutrophil extracellular traps via regulation of autophagy

(2013) Asako Itakura et al.   AMERICAN JOURNAL OF PHYSIOLOGY-CELL PHYSIOLOGY

GSVA: gene set variation analysis for microarray and RNA-Seq data

(2013) Sonja Hänzelmann et al.   BMC BIOINFORMATICS

Spatiotemporal Dynamics of Intratumoral Immune Cells Reveal the Immune Landscape in Human Cancer

(2013) Gabriela Bindea et al.   IMMUNITY

Oncology Meets Immunology: The Cancer-Immunity Cycle

(2013) Daniel S. Chen et al.   IMMUNITY

Neutrophil extracellular traps sequester circulating tumor cells and promote metastasis

(2013) Jonathan Cools-Lartigue et al.   JOURNAL OF CLINICAL INVESTIGATION

Inferring tumour purity and stromal and immune cell admixture from expression data

(2013) Kosuke Yoshihara et al.   Nature Communications

Genomics of Drug Sensitivity in Cancer (GDSC): a resource for therapeutic biomarker discovery in cancer cells

(2012) Wanjuan Yang et al.   NUCLEIC ACIDS RESEARCH

clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters

(2012) Guangchuang Yu et al.   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY

Cancers predispose neutrophils to release extracellular DNA traps that contribute to cancer-associated thrombosis

(2012) M. Demers et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

High-Mobility Group Box-1 Mediates Toll-Like Receptor 4–Dependent Angiogenesis

(2011) Qing Lin et al.   ARTERIOSCLEROSIS THROMBOSIS AND VASCULAR BIOLOGY

ConsensusClusterPlus: a class discovery tool with confidence assessments and item tracking

(2010) Matthew D. Wilkerson et al.   BIOINFORMATICS