Emergent dynamics of adult stem cell lineages from single nucleus and single cell RNA-Seq of Drosophila testes

FlyPhoneDB: an integrated web-based resource for cell–cell communication prediction in Drosophila

(2022) Yifang Liu et al.   GENETICS

Visceral mesoderm signaling regulates assembly position and function of the Drosophila testis niche

(2022) Lauren Anllo et al.   DEVELOPMENTAL CELL

Fly Cell Atlas: A single-nucleus transcriptomic atlas of the adult fruit fly

(2022) Hongjie Li et al.   SCIENCE

Activation of the EGFR/MAPK pathway drives transdifferentiation of quiescent niche cells to stem cells in the Drosophila testis niche

(2022) Leah J Greenspan et al.   eLife

Dynamic sex chromosome expression in Drosophila male germ cells

(2021) Sharvani Mahadevaraju et al.   Nature Communications

Single-cell transcriptomes of developing and adult olfactory receptor neurons in Drosophila

(2021) Colleen N McLaughlin et al.   eLife

The Roles of the LIM Domain Proteins in Drosophila Cardiac and Hematopoietic Morphogenesis

(2021) Meihua She et al.   Frontiers in Cardiovascular Medicine

An actomyosin clamp assembled by the Amphiphysin-Rho1-Dia/DAAM-Rok pathway reinforces somatic cell membrane folded around spermatid heads

(2021) Tushna Kapoor et al.   Cell Reports

Proliferative stem cells maintain quiescence of their niche by secreting the Activin inhibitor Follistatin

(2021) Salvador C. Herrera et al.   DEVELOPMENTAL CELL

Single-Cell RNA Sequencing Defines the Regulation of Spermatogenesis by Sertoli-Cell Androgen Signaling

(2021) Congcong Cao et al.   Frontiers in Cell and Developmental Biology

The Dynamic Transcriptional Cell Atlas of Testis Development during Human Puberty

(2020) Jingtao Guo et al.   Cell Stem Cell

Single-cyst transcriptome analysis of Drosophila male germline stem cell lineage

(2020) Zhen Shi et al.   DEVELOPMENT

Developmental regulation of cell type-specific transcription by novel promoter-proximal sequence elements

(2020) Dan Lu et al.   GENES & DEVELOPMENT

Single-cell resolution analysis of the human pancreatic ductal progenitor cell niche

(2020) Mirza Muhammad Fahd Qadir et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

mRNA localization mediates maturation of cytoplasmic cilia in Drosophila spermatogenesis

(2020) Jaclyn M. Fingerhut et al.   JOURNAL OF CELL BIOLOGY

Survey of the Ciliary Motility Machinery of Drosophila Sperm and Ciliated Mechanosensory Neurons Reveals Unexpected Cell-Type Specific Variations: A Model for Motile Ciliopathies

(2019) Petra zur Lage et al.   Frontiers in Genetics

The single-cell transcriptional landscape of mammalian organogenesis

(2019) Junyue Cao et al.   NATURE

Satellite DNA-containing gigantic introns in a unique gene expression program during Drosophila spermatogenesis

(2019) Jaclyn M. Fingerhut et al.   PLoS Genetics

Stem cell differentiation trajectories in Hydra resolved at single-cell resolution

(2019) Stefan Siebert et al.   SCIENCE

Developmental kinetics and transcriptome dynamics of stem cell specification in the spermatogenic lineage

(2019) Nathan C. Law et al.   Nature Communications

Testis single-cell RNA-seq reveals the dynamics of de novo gene transcription and germline mutational bias in Drosophila

(2019) Evan Witt et al.   eLife

Cnidarian Cell Type Diversity and Regulation Revealed by Whole-Organism Single-Cell RNA-Seq

(2018) Arnau Sebé-Pedrós et al.   CELL

Alignment of single-cell trajectories to compare cellular expression dynamics

(2018) Ayelet Alpert et al.   NATURE METHODS

Cell type transcriptome atlas for the planarianSchmidtea mediterranea

(2018) Christopher T. Fincher et al.   SCIENCE

Cell type atlas and lineage tree of a whole complex animal by single-cell transcriptomics

(2018) Mireya Plass et al.   SCIENCE

Analysis of Drosophila melanogaster testis transcriptome

(2018) Viktor Vedelek et al.   BMC GENOMICS

Single-cell RNA-seq uncovers dynamic processes and critical regulators in mouse spermatogenesis

(2018) Yao Chen et al.   CELL RESEARCH

A Comprehensive Roadmap of Murine Spermatogenesis Defined by Single-Cell RNA-Seq

(2018) Christopher Daniel Green et al.   DEVELOPMENTAL CELL

Aligning Single-Cell Developmental and Reprogramming Trajectories Identifies Molecular Determinants of Myogenic Reprogramming Outcome

(2018) Davide Cacchiarelli et al.   Cell Systems

Live imaging reveals hub cell assembly and compaction dynamics during morphogenesis of the Drosophila testis niche

(2018) Lauren Anllo et al.   DEVELOPMENTAL BIOLOGY

Single-cell transcriptomics of 20 mouse organs creates a Tabula Muris

(2018) et al.   NATURE

The ModERN Resource: Genome-Wide Binding Profiles for Hundreds ofDrosophilaandCaenorhabditis elegansTranscription Factors

(2017) Michelle M. Kudron et al.   GENETICS

A single-cell survey of the small intestinal epithelium

(2017) Adam L. Haber et al.   NATURE

Comprehensive single-cell transcriptional profiling of a multicellular organism

(2017) Junyue Cao et al.   SCIENCE

Blocking promiscuous activation at cryptic promoters directs cell type–specific gene expression

(2017) Jongmin Kim et al.   SCIENCE

The ModERN Resource: Genome-Wide Binding Profiles for Hundreds ofDrosophilaandCaenorhabditis elegansTranscription Factors

(2017) Michelle M. Kudron et al.   GENETICS

Cell type-specific translational repression of Cyclin B during meiosis in males

(2015) Catherine Craig Baker et al.   DEVELOPMENT

Spatial reconstruction of single-cell gene expression data

(2015) Rahul Satija et al.   NATURE BIOTECHNOLOGY

Piwi Is a Key Regulator of Both Somatic and Germline Stem Cells in the Drosophila Testis

(2015) Jacob Gonzalez et al.   Cell Reports

A somatic permeability barrier around the germline is essential for Drosophila spermatogenesis

(2014) M. J. Fairchild et al.   DEVELOPMENT

Analysis of the expression patterns, subcellular localisations and interaction partners of Drosophila proteins using a pigP protein trap library

(2014) N. Lowe et al.   DEVELOPMENT

Neprilysins: An Evolutionarily Conserved Family of Metalloproteases That Play Important Roles in Reproduction in Drosophila

(2014) J. L. Sitnik et al.   GENETICS

The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells

(2014) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Conversion of Quiescent Niche Cells to Somatic Stem Cells Causes Ectopic Niche Formation in the Drosophila Testis

(2014) Phylis Hétié et al.   Cell Reports

Escargot Restricts Niche Cell to Stem Cell Conversion in the Drosophila Testis

(2014) Justin Voog et al.   Cell Reports

Spermatid Cyst Polarization in Drosophila Depends upon apkc and the CPEB Family Translational Regulator orb2

(2014) Shuwa Xu et al.   PLoS Genetics

Three levels of regulation lead to protamine and Mst77F expression in Drosophila

(2013) Bridlin Barckmann et al.   DEVELOPMENTAL BIOLOGY

Cellular Source and Mechanisms of High Transcriptome Complexity in the Mammalian Testis

(2013) Magali Soumillon et al.   Cell Reports

Dmp53 is sequestered to nuclear bodies in spermatogonia of Drosophila melanogaster

(2012) Adrian C. Monk et al.   CELL AND TISSUE RESEARCH

Tup/Islet1 integrates time and position to specify muscle identity in Drosophila

(2012) H. Boukhatmi et al.   DEVELOPMENT

Hedgehog is required for CySC self-renewal but does not contribute to the GSC niche in the Drosophila testis

(2012) M. Amoyel et al.   DEVELOPMENT

Hh signalling is essential for somatic stem cell maintenance in the Drosophila testis niche

(2012) M. Michel et al.   DEVELOPMENT

Multinucleated smooth muscles and mononucleated as well as multinucleated striated muscles develop during establishment of the male reproductive organs of Drosophila melanogaster

(2012) Loreen Susic-Jung et al.   DEVELOPMENTAL BIOLOGY

vasais expressed in somatic cells of the embryonic gonad in a sex-specific manner inDrosophila melanogaster

(2012) Andrew D. Renault   Biology Open

Sustained Elongation of Sperm Tail Promoted by Local Remodeling of Giant Mitochondria in Drosophila

(2011) Tatsuhiko Noguchi et al.   CURRENT BIOLOGY

lines and bowl affect the specification of cyst stem cells and niche cells in the Drosophila testis

(2011) S. DiNardo et al.   DEVELOPMENT

Dynamic regulation of alternative splicing and chromatin structure in Drosophila gonads revealed by RNA-seq

(2010) Qiang Gan et al.   CELL RESEARCH

Gradients of a Ubiquitin E3 Ligase Inhibitor and a Caspase Inhibitor Determine Differentiation or Death in Spermatids

(2010) Yosef Kaplan et al.   DEVELOPMENTAL CELL

The Drosophila melanogaster sperm proteome-II (DmSP-II)

(2010) Elizabeth R. Wasbrough et al.   Journal of Proteomics

Germline self-renewal requires cyst stem cells and stat regulates niche adhesion in Drosophila testes

(2010) Judith L. Leatherman et al.   NATURE CELL BIOLOGY

discs large regulates somatic cyst cell survival and expansion in Drosophila testis

(2009) Fani Papagiannouli et al.   CELL RESEARCH

Determination of gene expression patterns using in situ hybridization to Drosophila testes

(2009) Ceri A Morris et al.   Nature Protocols

Post-meiotic transcription in Drosophila testes

(2008) C. Barreau et al.   DEVELOPMENT

Nonautonomous Sex Determination Controls Sexually Dimorphic Development of the Drosophila Gonad

(2008) Tony DeFalco et al.   DEVELOPMENTAL CELL

Multipotent somatic stem cells contribute to the stem cell niche in the Drosophila testis

(2008) Justin Voog et al.   NATURE