Sensory conflict disrupts circadian rhythms in the sea anemone Nematostella vectensis

A thermometer circuit for hot temperature adjusts Drosophila behavior to persistent heat

(2022) Michael H. Alpert et al.   CURRENT BIOLOGY

Step in Time: Conservation of Circadian Clock Genes in Animal Evolution

(2022) Daniel Stanton et al.   INTEGRATIVE AND COMPARATIVE BIOLOGY

Single-cell transcriptomics identifies conserved regulators of neuroglandular lineages

(2022) Julia Steger et al.   Cell Reports

Systematic analysis of differential rhythmic liver gene expression mediated by the circadian clock and feeding rhythms

(2021) Benjamin D. Weger et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

How to cope in heterogeneous coastal environments: Spatio-temporally endogenous circadian rhythm of valve gaping by mussels

(2021) C. Bertolini et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Ambient Temperature as a Strong Zeitgeber of Circadian Rhythms in Response to Temperature Sensitivity and Poor Heat Dissipation Abilities in Subterranean African Mole-Rats

(2021) Daniel W. Hart et al.   JOURNAL OF BIOLOGICAL RHYTHMS

Repeated evolution of circadian clock dysregulation in cavefish populations

(2021) Katya L. Mack et al.   PLoS Genetics

Decoupling behavioral and transcriptional responses to color in an eyeless cnidarian

(2020) Whitney B. Leach et al.   BMC GENOMICS

Light and Temperature Synchronizes Locomotor Activity in the Linden Bug, Pyrrhocoris apterus

(2020) Magdalena Maria Kaniewska et al.   Frontiers in Physiology

Deep learning-based behavioral analysis reaches human accuracy and is capable of outperforming commercial solutions

(2020) Oliver Sturman et al.   NEUROPSYCHOPHARMACOLOGY

Some like it hot: population-specific adaptations in venom production to abiotic stressors in a widely distributed cnidarian

(2020) Maria Y. Sachkova et al.   BMC BIOLOGY

Circadian regulation of transporter expression and implications for drug disposition

(2020) Jiří Pácha et al.   Expert Opinion on Drug Metabolism & Toxicology

SOX2-Dependent Transcription in Clock Neurons Promotes the Robustness of the Central Circadian Pacemaker

(2019) Arthur H. Cheng et al.   Cell Reports

Rhythmic Food Intake Drives Rhythmic Gene Expression More Potently than the Hepatic Circadian Clock in Mice

(2019) Ben J. Greenwell et al.   Cell Reports

Seasonal temperature, the lunar cycle and diurnal rhythms interact in a combinatorial manner to modulate genomic responses to the environment in a reef‐building coral

(2019) Daniel M. Wuitchik et al.   MOLECULAR ECOLOGY

Transcriptional remodelling upon light removal in a model cnidarian: Losses and gains in gene expression

(2019) Whitney B. Leach et al.   MOLECULAR ECOLOGY

ECHO: an Application for Detection and Analysis of Oscillators Identifies Metabolic Regulation on Genome-Wide Circadian Output

(2019) Hannah De los Santos et al.   BIOINFORMATICS

Weak coupling between intracellular feedback loops explains dissociation of clock gene dynamics

(2019) Christoph Schmal et al.   PLoS Computational Biology

Environmental entrainment demonstrates natural circadian rhythmicity in the cnidarian Nematostella vectensis

(2019) Ann M. Tarrant et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Cnidarian Cell Type Diversity and Regulation Revealed by Whole-Organism Single-Cell RNA-Seq

(2018) Arnau Sebé-Pedrós et al.   CELL

Effects of Light and Temperature on Daily Activity and Clock Gene Expression in Two Mosquito Disease Vectors

(2018) Gustavo B. S. Rivas et al.   JOURNAL OF BIOLOGICAL RHYTHMS

DeepLabCut: markerless pose estimation of user-defined body parts with deep learning

(2018) Alexander Mathis et al.   NATURE NEUROSCIENCE

How Many Clocks, How Many Times? On the Sensory Basis and Computational Challenges of Circadian Systems

(2018) Jason Somers et al.   Frontiers in Behavioral Neuroscience

Rhythms of the Genome: Circadian Dynamics from Chromatin Topology, Tissue-Specific Gene Expression, to Behavior

(2018) Jake Yeung et al.   TRENDS IN GENETICS

Circadian Proteomic Analysis Uncovers Mechanisms of Post-Transcriptional Regulation in Metabolic Pathways

(2018) Jennifer M. Hurley et al.   Cell Systems

Circadian Rhythms and Sleep in Drosophila melanogaster

(2017) Christine Dubowy et al.   GENETICS

Light Dominates Peripheral Circadian Oscillations in Drosophila melanogaster During Sensory Conflict

(2017) Ross E. F. Harper et al.   JOURNAL OF BIOLOGICAL RHYTHMS

Principles for circadian orchestration of metabolic pathways

(2017) Kevin Thurley et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Circadian Rhythms and Sleep in Drosophila melanogaster

(2017) Christine Dubowy et al.   GENETICS

Robust hyperparameter estimation protects against hypervariable genes and improves power to detect differential expression

(2016) Belinda Phipson et al.   Annals of Applied Statistics

The Circadian Clock and Human Health

(2016) Till Roenneberg et al.   CURRENT BIOLOGY

Sensory Conflict Disrupts Activity of the Drosophila Circadian Network

(2016) Ross E.F. Harper et al.   Cell Reports

Daily cycle in oxygen consumption by the sea anemoneNematostella vectensisStephenson

(2016) Amy E. Maas et al.   Biology Open

“The Environment is Everything That Isn't Me”: Molecular Mechanisms and Evolutionary Dynamics of Insect Clocks in Variable Surroundings

(2016) Gustavo B. S. Rivas et al.   Frontiers in Physiology

Gene expression associated with white syndromes in a reef building coral, Acropora hyacinthus

(2015) Rachel M Wright et al.   BMC GENOMICS

Variations in Phase and Amplitude of Rhythmic Clock Gene Expression across Prefrontal Cortex, Hippocampus, Amygdala, and Hypothalamic Paraventricular and Suprachiasmatic Nuclei of Male and Female Rats

(2015) Lauren E. Chun et al.   JOURNAL OF BIOLOGICAL RHYTHMS

Why weight? Modelling sample and observational level variability improves power in RNA-seq analyses

(2015) Ruijie Liu et al.   NUCLEIC ACIDS RESEARCH

Genomic determinants of coral heat tolerance across latitudes

(2015) G. B. Dixon et al.   SCIENCE

Profiling molecular and behavioral circadian rhythms in the non-symbiotic sea anemone Nematostella vectensis

(2015) Matan Oren et al.   Scientific Reports

The Light Wavelength Affects the Ontogeny of Clock Gene Expression and Activity Rhythms in Zebrafish Larvae

(2015) Viviana Di Rosa et al.   PLoS One

Role of Temperature in Mediating Morning and Evening Emergence Chronotypes in Fruit Flies Drosophila melanogaster

(2014) K. L. Nikhil et al.   JOURNAL OF BIOLOGICAL RHYTHMS

Detecting Rhythms in Time Series with RAIN

(2014) Paul F. Thaben et al.   JOURNAL OF BIOLOGICAL RHYTHMS

Strengths and Limitations of Period Estimation Methods for Circadian Data

(2014) Tomasz Zielinski et al.   PLoS One

A circadian gene expression atlas in mammals: Implications for biology and medicine

(2014) Ray Zhang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Metabolic effects of sleep disruption, links to obesity and diabetes

(2014) Arlet V. Nedeltcheva et al.   Current Opinion in Endocrinology Diabetes and Obesity

Rhythmic Degradation Explains and Unifies Circadian Transcriptome and Proteome Data

(2014) Sarah Lück et al.   Cell Reports

The ecological impacts of nighttime light pollution: a mechanistic appraisal

(2013) Kevin J. Gaston et al.   BIOLOGICAL REVIEWS

Circadian timekeeping and output mechanisms in animals

(2013) Paul E Hardin et al.   CURRENT OPINION IN NEUROBIOLOGY

Circadian Clocks in the Cnidaria: Environmental Entrainment, Molecular Regulation, and Organismal Outputs

(2013) Adam M. Reitzel et al.   INTEGRATIVE AND COMPARATIVE BIOLOGY

Antiphase Light and Temperature Cycles Affect PHYTOCHROME B-Controlled Ethylene Sensitivity and Biosynthesis, Limiting Leaf Movement and Growth of Arabidopsis

(2013) R. Bours et al.   PLANT PHYSIOLOGY

Molecular architecture of the mammalian circadian clock

(2013) Carrie L. Partch et al.   TRENDS IN CELL BIOLOGY

Unexpected features of Drosophila circadian behavioural rhythms under natural conditions

(2012) Stefano Vanin et al.   NATURE

Characterization of Circadian Behavior in the Starlet Sea Anemone, Nematostella vectensis

(2012) William D. Hendricks et al.   PLoS One

Circadian autophagy rhythm: a link between clock and metabolism?

(2012) Di Ma et al.   TRENDS IN ENDOCRINOLOGY AND METABOLISM

NORMA-Gene: A simple and robust method for qPCR normalization based on target gene data

(2011) Lars-Henrik Heckmann et al.   BMC BIOINFORMATICS

Circadian cycles are the dominant transcriptional rhythm in the intertidal mussel Mytilus californianus

(2011) K. M. Connor et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Mammalian Circadian Timing System: Organization and Coordination of Central and Peripheral Clocks

(2010) Charna Dibner et al.   Annual Review of Physiology

Cryptochrome-Positive and -Negative Clock Neurons in Drosophila Entrain Differentially to Light and Temperature

(2010) Taishi Yoshii et al.   JOURNAL OF BIOLOGICAL RHYTHMS

Interacting effect of thermoperiod and photoperiod on the eclosion rhythm in the onion fly, Delia antiqua supports the two-oscillator model

(2010) Yasuhiko Watari et al.   JOURNAL OF INSECT PHYSIOLOGY

Light Entrained Rhythmic Gene Expression in the Sea Anemone Nematostella vectensis: The Evolution of the Animal Circadian Clock

(2010) Adam M. Reitzel et al.   PLoS One

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Selective entrainment of the Drosophila circadian clock to daily gradients in environmental temperature

(2009) Jake Currie et al.   BMC BIOLOGY

Nuclear receptor complement of the cnidarian Nematostella vectensis: phylogenetic relationships and developmental expression patterns

(2009) Adam M Reitzel et al.   BMC EVOLUTIONARY BIOLOGY

Synergic Entrainment of Drosophila’s Circadian Clock by Light and Temperature

(2009) Taishi Yoshii et al.   JOURNAL OF BIOLOGICAL RHYTHMS

Amplification efficiency: linking baseline and bias in the analysis of quantitative PCR data

(2009) J. M. Ruijter et al.   NUCLEIC ACIDS RESEARCH

Nonparametric entrainment of the in vitro circadian phosphorylation rhythm of cyanobacterial KaiC by temperature cycle

(2009) T. Yoshida et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Meter of Metabolism

(2008) Carla B. Green et al.   CELL