The microbiota regulates hematopoietic stem and progenitor cell development by mediating inflammatory signals in the niche

The microbiota regulates hematopoietic stem cell fate decisions by controlling iron availability in bone marrow

(2022) Dachuan Zhang et al.   Cell Stem Cell

MCC950 in the treatment of NLRP3-mediated inflammatory diseases: Latest evidence and therapeutic outcomes

(2022) Saba Bakhshi et al.   INTERNATIONAL IMMUNOPHARMACOLOGY

Changes to gut amino acid transporters and microbiome associated with increased E/I ratio in Chd8+/− mouse model of ASD-like behavior

(2022) You Yu et al.   Nature Communications

Dissecting the contribution of host genetics and the microbiome in complex behaviors

(2021) Shelly A. Buffington et al.   CELL

The autism-related protein CHD8 contributes to the stemness and differentiation of mouse hematopoietic stem cells

(2021) Akihiro Nita et al.   Cell Reports

Chromatin remodeler CHD8 governs hematopoietic stem/progenitor survival by regulating ATM-mediated P53 protein stability

(2021) Zhaowei Tu et al.   BLOOD

IL-1 Mediates Microbiome-Induced Inflamm-Ageing of Hematopoietic Stem Cells in Mice

(2021) Larisa Vladimirovna Kovtonyuk et al.   BLOOD

Inflammatory signaling regulates hematopoietic stem and progenitor cell development and homeostasis

(2021) Amélie Collins et al.   JOURNAL OF EXPERIMENTAL MEDICINE

Single-Cell Analysis of Neonatal HSC Ontogeny Reveals Gradual and Uncoordinated Transcriptional Reprogramming that Begins before Birth

(2020) Yanan Li et al.   Cell Stem Cell

The selective NLRP3-inflammasome inhibitor MCC950 reduces myocardial fibrosis and improves cardiac remodeling in a mouse model of myocardial infarction

(2019) Rifeng Gao et al.   INTERNATIONAL IMMUNOPHARMACOLOGY

Commensal Microbiota Regulate Vertebrate Innate Immunity-Insights From the Zebrafish

(2019) Caitlin C. Murdoch et al.   Frontiers in Immunology

The zebrafish as a model for gastrointestinal tract–microbe interactions

(2019) Erika M. Flores et al.   CELLULAR MICROBIOLOGY

Intestinal microbiome adjusts the innate immune setpoint during colonization through negative regulation of MyD88

(2018) Bjørn E. V. Koch et al.   Nature Communications

Simple statistical identification and removal of contaminant sequences in marker-gene and metagenomics data

(2018) Nicole M. Davis et al.   Microbiome

TNF signaling and macrophages govern fin regeneration in zebrafish larvae

(2017) Mai Nguyen-Chi et al.   Cell Death & Disease

Sensing of the microbiota by NOD1 in mesenchymal stromal cells regulates murine hematopoiesis

(2016) Chiaki Iwamura et al.   BLOOD

Antibiotics impair murine hematopoiesis by depleting the intestinal microbiota

(2016) Kamilla S. Josefsdottir et al.   BLOOD

A Zebrafish Model of 5q-Syndrome Using CRISPR/Cas9 Targeting RPS14 Reveals a p53-Independent and p53-Dependent Mechanism of Erythroid Failure

(2016) Jason Ear et al.   Journal of Genetics and Genomics

CHD8 haploinsufficiency results in autistic-like phenotypes in mice

(2016) Yuta Katayama et al.   NATURE

Chronic interleukin-1 exposure drives haematopoietic stem cells towards precocious myeloid differentiation at the expense of self-renewal

(2016) Eric M. Pietras et al.   NATURE CELL BIOLOGY

The microbiome in early life: implications for health outcomes

(2016) Sabrina Tamburini et al.   NATURE MEDICINE

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

The Human Intestinal Microbiome in Health and Disease

(2016) Susan V. Lynch et al.   NEW ENGLAND JOURNAL OF MEDICINE

A conserved bacterial protein induces pancreatic beta cell expansion during zebrafish development

(2016) Jennifer Hampton Hill et al.   eLife

Accelerated dysbiosis of gut microbiota during aggravation of DSS-induced colitis by a butyrate-producing bacterium

(2016) Qianpeng Zhang et al.   Scientific Reports

Microbiota from Obese Mice Regulate Hematopoietic Stem Cell Differentiation by Altering the Bone Niche

(2015) Yubin Luo et al.   Cell Metabolism

The composition of the zebrafish intestinal microbial community varies across development

(2015) W Zac Stephens et al.   ISME Journal

Inflammatory signaling regulates hematopoietic stem and progenitor cell emergence in vertebrates

(2014) Q. He et al.   BLOOD

Proinflammatory Signaling Regulates Hematopoietic Stem Cell Emergence

(2014) Raquel Espín-Palazón et al.   CELL

Disruptive CHD8 Mutations Define a Subtype of Autism Early in Development

(2014) Raphael Bernier et al.   CELL

Gut Microbiota Promote Hematopoiesis to Control Bacterial Infection

(2014) Arya Khosravi et al.   Cell Host & Microbe

Interferon Gamma Signaling Positively Regulates Hematopoietic Stem Cell Emergence

(2014) Suphansa Sawamiphak et al.   DEVELOPMENTAL CELL

Inflammatory signaling regulates embryonic hematopoietic stem and progenitor cell production

(2014) Yan Li et al.   GENES & DEVELOPMENT

Systemic Response to Ultraviolet Radiation Involves Induction of Leukocytic IL-1  and Inflammation in Zebrafish

(2014) S. Banerjee et al.   JOURNAL OF IMMUNOLOGY

Il-1  and Reactive Oxygen Species Differentially Regulate Neutrophil Directional Migration and Basal Random Motility in a Zebrafish Injury-Induced Inflammation Model

(2014) B. Yan et al.   JOURNAL OF IMMUNOLOGY

Gut microbiota metabolism of dietary fiber influences allergic airway disease and hematopoiesis

(2014) Aurélien Trompette et al.   NATURE MEDICINE

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

(2013) Y. Liao et al.   BIOINFORMATICS

Embryonic hematopoiesis

(2013) Rachel Golub et al.   BLOOD CELLS MOLECULES AND DISEASES

Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data

(2013) Chen-Shan Chin et al.   NATURE METHODS

Chemically Induced Intestinal Damage Models in Zebrafish Larvae

(2013) Stefan H. Oehlers et al.   Zebrafish

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

Dysregulated Hematopoietic Stem and Progenitor Cell Activity Promotes Interleukin-23-Driven Chronic Intestinal Inflammation

(2012) Thibault Griseri et al.   IMMUNITY

cMyb regulates hematopoietic stem/progenitor cell mobilization during zebrafish hematopoiesis

(2011) Y. Zhang et al.   BLOOD

Tumor necrosis factor restricts hematopoietic stem cell activity in mice: involvement of two distinct receptors

(2011) Cornelis J.H. Pronk et al.   JOURNAL OF EXPERIMENTAL MEDICINE

Hematopoietic stem and progenitor cell trafficking

(2011) Irina B. Mazo et al.   TRENDS IN IMMUNOLOGY

Host–microbe interactions in the developing zebrafish

(2010) Michelle Kanther et al.   CURRENT OPINION IN IMMUNOLOGY

Haematopoietic stem cells derive directly from aortic endothelium during development

(2010) Julien Y. Bertrand et al.   NATURE

Gut Microbiota in Health and Disease

(2010) Inna Sekirov et al.   PHYSIOLOGICAL REVIEWS

Zebrafish kidney stromal cell lines support multilineage hematopoiesis

(2009) D. L. Stachura et al.   BLOOD

Interleukin-1 regulates hematopoietic progenitor and stem cells in the midgestation mouse fetal liver

(2009) C. Orelio et al.   HAEMATOLOGICA

Interleukin-1-mediated hematopoietic cell regulation in the aorta-gonad-mesonephros region of the mouse embryo

(2008) C. Orelio et al.   BLOOD

Hematopoiesis: An Evolving Paradigm for Stem Cell Biology

(2008) Stuart H. Orkin et al.   CELL

Methods for generating and colonizing gnotobiotic zebrafish

(2008) Linh N Pham et al.   Nature Protocols