Differential requirements for Gcn5 and NuA4 HAT activities in the starvation-induced versus basal transcriptomes

Two roles for the yeast transcription coactivator SAGA and a set of genes redundantly regulated by TFIID and SAGA

(2020) Rafal Donczew et al.   eLife

Chromatin remodeler Ino80C acts independently of H2A.Z to evict promoter nucleosomes and stimulate transcription of highly expressed genes in yeast

(2020) Hongfang Qiu et al.   NUCLEIC ACIDS RESEARCH

SWI/SNF and RSC cooperate to reposition and evict promoter nucleosomes at highly expressed genes in yeast

(2018) Yashpal Rawal et al.   GENES & DEVELOPMENT

Gcn4 Binding in Coding Regions Can Activate Internal and Canonical 5′ Promoters in Yeast

(2018) Yashpal Rawal et al.   MOLECULAR CELL

Distinct patterns of histone acetyltransferase and Mediator deployment at yeast protein-coding genes

(2018) Maria Jessica Bruzzone et al.   GENES & DEVELOPMENT

Chromatin Regulation by the NuA4 Acetyltransferase Complex Is Mediated by Essential Interactions Between Enhancer of Polycomb (Epl1) and Esa1

(2017) Naomi E. Searle et al.   GENETICS

Evidence that Mediator is essential for Pol II transcription, but is not a required component of the preinitiation complex in vivo

(2017) Natalia Petrenko et al.   eLife

Chromatin Regulation by the NuA4 Acetyltransferase Complex Is Mediated by Essential Interactions Between Enhancer of Polycomb (Epl1) and Esa1

(2017) Naomi E. Searle et al.   GENETICS

Nucleosome repositioning underlies dynamic gene expression

(2016) Nicolas Nocetti et al.   GENES & DEVELOPMENT

The ISW1 and CHD1 ATP-dependent chromatin remodelers compete to set nucleosome spacingin vivo

(2016) Josefina Ocampo et al.   NUCLEIC ACIDS RESEARCH

Molecular mechanisms of ribosomal protein gene coregulation

(2015) Rohit Reja et al.   GENES & DEVELOPMENT

Genome-wide cooperation by HAT Gcn5, remodeler SWI/SNF, and chaperone Ydj1 in promoter nucleosome eviction and transcriptional activation

(2015) Hongfang Qiu et al.   GENOME RESEARCH

The chromatin remodelers RSC and ISW1 display functional and chromatin-based promoter antagonism

(2015) Timothy J Parnell et al.   eLife

RSC-dependent constructive and destructive interference between opposing arrays of phased nucleosomes in yeast

(2014) Dwaipayan Ganguli et al.   GENOME RESEARCH

Heavy transcription of yeast genes correlates with differential loss of histone H2B relative to H4 and queued RNA polymerases

(2014) Hope A. Cole et al.   NUCLEIC ACIDS RESEARCH

Pol II CTD kinases Bur1 and Kin28 promote Spt5 CTR-independent recruitment of Paf1 complex

(2012) Hongfang Qiu et al.   EMBO JOURNAL

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Understanding histone acetyltransferase Rtt109 structure and function: how many chaperones does it take?

(2011) Sheena D’Arcy et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Transcriptional Regulation inSaccharomyces cerevisiae: Transcription Factor Regulation and Function, Mechanisms of Initiation, and Roles of Activators and Coactivators

(2011) Steven Hahn et al.   GENETICS

Stable and dynamic nucleosome states during a meiotic developmental process

(2011) L. Zhang et al.   GENOME RESEARCH

The Acidic Transcription Activator Gcn4 Binds the Mediator Subunit Gal11/Med15 Using a Simple Protein Interface Forming a Fuzzy Complex

(2011) Peter S. Brzovic et al.   MOLECULAR CELL

Integrative genomics viewer

(2011) James T Robinson et al.   NATURE BIOTECHNOLOGY

Mechanisms that Specify Promoter Nucleosome Location and Identity

(2009) Paul D. Hartley et al.   CELL

Activator Gcn4 Employs Multiple Segments of Med15/Gal11, Including the KIX Domain, to Recruit Mediator to Target Genesin Vivo

(2009) Iness Jedidi et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

NuA4 Lysine Acetyltransferase Esa1 Is Targeted to Coding Regions and Stimulates Transcription Elongation with Gcn5

(2009) D. S. Ginsburg et al.   MOLECULAR AND CELLULAR BIOLOGY

Disrupting Vesicular Trafficking at the Endosome Attenuates Transcriptional Activation by Gcn4

(2008) F. Zhang et al.   MOLECULAR AND CELLULAR BIOLOGY

Functional Dissection of the NuA4 Histone Acetyltransferase Reveals Its Role as a Genetic Hub and that Eaf1 Is Essential for Complex Integrity

(2008) L. Mitchell et al.   MOLECULAR AND CELLULAR BIOLOGY

Eaf1 Is the Platform for NuA4 Molecular Assembly That Evolutionarily Links Chromatin Acetylation to ATP-Dependent Exchange of Histone H2A Variants

(2008) A. Auger et al.   MOLECULAR AND CELLULAR BIOLOGY

The Anchor-Away Technique: Rapid, Conditional Establishment of Yeast Mutant Phenotypes

(2008) Hirohito Haruki et al.   MOLECULAR CELL

A Library of Yeast Transcription Factor Motifs Reveals a Widespread Function for Rsc3 in Targeting Nucleosome Exclusion at Promoters

(2008) Gwenael Badis et al.   MOLECULAR CELL