Curvature Matters: Modeling Calcium Binding to Neutral and Anionic Phospholipid Bilayers
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Title
Curvature Matters: Modeling Calcium Binding to Neutral and Anionic Phospholipid Bilayers
Authors
Keywords
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Journal
Journal of Physical Chemistry B
Volume 127, Issue 20, Pages 4523-4531
Publisher
American Chemical Society (ACS)
Online
2023-05-16
DOI
10.1021/acs.jpcb.3c01962
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- Bilayer Properties of Lipid A from Various Gram-Negative Bacteria
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- (2016) Jumin Lee et al. BIOPHYSICAL JOURNAL
- Improved model of hydrated calcium ion for molecular dynamics simulations using classical biomolecular force fields
- (2016) Jejoong Yoo et al. BIOPOLYMERS
- The complex nature of calcium cation interactions with phospholipid bilayers
- (2016) Adéla Melcrová et al. Scientific Reports
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- (2015) H. T. McMahon et al. JOURNAL OF CELL SCIENCE
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- Electronic Continuum Model for Molecular Dynamics Simulations of Biological Molecules
- (2010) I. V. Leontyev et al. Journal of Chemical Theory and Computation
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