Genome rearrangements derived from homoeologous recombination following allopolyploidy speciation in coffee

Hybridization and speciation

(2013) R. Abbott et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Contribution of subgenomes to the transcriptome and their intertwined regulation in the allopolyploidCoffea arabicagrown at contrasted temperatures

(2013) Marie-Christine Combes et al.   NEW PHYTOLOGIST

Diploidization and genome size change in allopolyploids is associated with differential dynamics of low- and high-copy sequences

(2013) Simon Renny-Byfield et al.   PLANT JOURNAL

A comparative transcriptomic study of an allotetraploid and its diploid progenitors illustrates the unique advantages and challenges of RNA-seq in plant species

(2012) Daniel C. Ilut et al.   AMERICAN JOURNAL OF BOTANY

Targeted sequence capture as a powerful tool for evolutionary analysis1

(2012) Corrinne E. Grover et al.   AMERICAN JOURNAL OF BOTANY

Next-generation sequencing and genome evolution in allopolyploids

(2012) Richard J. A. Buggs et al.   AMERICAN JOURNAL OF BOTANY

Deciphering the complex leaf transcriptome of the allotetraploid species Nicotiana tabacum: a phylogenomic perspective

(2012) Aureliano Bombarely et al.   BMC GENOMICS

Duplicate gene evolution, homoeologous recombination, and transcriptome characterization in allopolyploid cotton

(2012) Lex E Flagel et al.   BMC GENOMICS

Use of mRNA-seq to discriminate contributions to the transcriptome from the constituent genomes of the polyploid crop species Brassica napus

(2012) Janet Higgins et al.   BMC GENOMICS

Rapid, Repeated, and Clustered Loss of Duplicate Genes in Allopolyploid Plant Populations of Independent Origin

(2012) Richard J.A. Buggs et al.   CURRENT BIOLOGY

Genome evolution: extinction, continuation or explosion?

(2012) JS (Pat) Heslop-Harrison   CURRENT OPINION IN PLANT BIOLOGY

Rarely successful polyploids and their legacy in plant genomes

(2012) Nils Arrigo et al.   CURRENT OPINION IN PLANT BIOLOGY

Polyploidy and its effect on evolutionary success: old questions revisited with new tools

(2012) A Madlung   HEREDITY

Homoeolog expression bias and expression level dominance in allopolyploid cotton

(2012) M-J Yoo et al.   HEREDITY

Genomic asymmetry in allopolyploid plants: wheat as a model

(2012) M. Feldman et al.   JOURNAL OF EXPERIMENTAL BOTANY

Associative transcriptomics of traits in the polyploid crop species Brassica napus

(2012) Andrea L Harper et al.   NATURE BIOTECHNOLOGY

The fate of duplicated genes in a polyploid plant genome

(2012) Anne Roulin et al.   PLANT JOURNAL

The Impact of Climate Change on Indigenous Arabica Coffee (Coffea arabica): Predicting Future Trends and Identifying Priorities

(2012) Aaron P. Davis et al.   PLoS One

Dissecting the genome of the polyploid crop oilseed rape by transcriptome sequencing

(2011) Ian Bancroft et al.   NATURE BIOTECHNOLOGY

Genome evolution in diploid and tetraploid Coffea species as revealed by comparative analysis of orthologous genome segments

(2011) Alberto Cenci et al.   PLANT MOLECULAR BIOLOGY

Characterization of duplicate gene evolution in the recent natural allopolyploidTragopogon miscellusby next-generation sequencing and Sequenom iPLEX MassARRAY genotyping

(2010) RICHARD J. A. BUGGS et al.   MOLECULAR ECOLOGY

The first meiosis of resynthesized Brassica napus, a genome blender

(2010) E. Szadkowski et al.   NEW PHYTOLOGIST

Adaptive radiation in Coffea subgenus Coffea L. (Rubiaceae) in Africa and Madagascar

(2010) François Anthony et al.   PLANT SYSTEMATICS AND EVOLUTION

Bias in Plant Gene Content Following Different Sorts of Duplication: Tandem, Whole-Genome, Segmental, or by Transposition

(2009) Michael Freeling   Annual Review of Plant Biology

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Evolutionary rate variation, genomic dominance and duplicate gene expression evolution during allotetraploid cotton speciation

(2009) Lex E. Flagel et al.   NEW PHYTOLOGIST

Homoeologous recombination in allopolyploids: the polyploid ratchet

(2009) Robert T. Gaeta et al.   NEW PHYTOLOGIST

Dating the origins of polyploidy events

(2009) Jeff J. Doyle et al.   NEW PHYTOLOGIST

Homoeologous nonreciprocal recombination in polyploid cotton

(2009) Armel Salmon et al.   NEW PHYTOLOGIST

Evolution of rDNA in Nicotiana Allopolyploids: A Potential Link between rDNA Homogenization and Epigenetics

(2008) A. Kovarik et al.   ANNALS OF BOTANY

Evolutionary Genetics of Genome Merger and Doubling in Plants

(2008) Jeff J. Doyle et al.   Annual Review of Genetics

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS