Next Generation of Ovarian Cancer Detection Using Aptamers

The role of tetraspanins pan-cancer

(2022) Runzhi Huang et al.   iScience

TNMplot.com: A Web Tool for the Comparison of Gene Expression in Normal, Tumor and Metastatic Tissues

(2021) Áron Bartha et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Artificial Intelligence in Aptamer–Target Binding Prediction

(2021) Zihao Chen et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Highly accurate protein structure prediction with AlphaFold

(2021) John Jumper et al.   NATURE

Alchemical Binding Free Energy Calculations in AMBER20: Advances and Best Practices for Drug Discovery

(2020) Tai-Sung Lee et al.   Journal of Chemical Information and Modeling

Tspan15 plays a crucial role in metastasis in oral squamous cell carcinoma

(2019) Kazuya Hiroshima et al.   EXPERIMENTAL CELL RESEARCH

Tspan15 Is a New Stemness‐Related Marker in Hepatocellular Carcinoma

(2019) Nazha Sidahmed‐Adrar et al.   PROTEOMICS

Thermodynamic study of aptamers binding to their target proteins

(2018) Taiichi Sakamoto et al.   BIOCHIMIE

TSPAN15 interacts with BTRC to promote oesophageal squamous cell carcinoma metastasis via activating NF-κB signaling

(2018) Baozhu Zhang et al.   Nature Communications

SOX9/FXYD3/Src axis is critical for ER+ breast cancer stem cell function

(2018) Yue Xue et al.   MOLECULAR CANCER RESEARCH

DNA Aptamers to Human Immunodeficiency Virus Reverse Transcriptase Selected by a Primer-Free SELEX Method: Characterization and Comparison with Other Aptamers

(2018) Yi-Tak Lai et al.   Nucleic Acid Therapeutics

Barnaba: software for analysis of nucleic acid structures and trajectories

(2018) Sandro Bottaro et al.   RNA

International patterns and trends in ovarian cancer incidence, overall and by histologic subtype

(2017) S.B. Coburn et al.   INTERNATIONAL JOURNAL OF CANCER

Improvements to the APBS biomolecular solvation software suite

(2017) Elizabeth Jurrus et al.   PROTEIN SCIENCE

Three-dimensional modeling of single stranded DNA hairpins for aptamer-based biosensors

(2017) Iman Jeddi et al.   Scientific Reports

Integrative proteomic profiling of ovarian cancer cell lines reveals precursor cell associated proteins and functional status

(2016) F. Coscia et al.   Nature Communications

In Silico Aptamer Docking Studies: From a Retrospective Validation to a Prospective Case Study'TIM3 Aptamers Binding

(2016) Obdulia Rabal et al.   Molecular Therapy-Nucleic Acids

The Phyre2 web portal for protein modeling, prediction and analysis

(2015) Lawrence A Kelley et al.   Nature Protocols

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

CHARMM-GUIMembrane Buildertoward realistic biological membrane simulations

(2014) Emilia L. Wu et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

Ovarian Cancer Cell Line Panel (OCCP): Clinical Importance of In Vitro Morphological Subtypes

(2014) Corine M. Beaufort et al.   PLoS One

Expression and clinical significance of FXYD3 in endometrial cancer

(2014) YIFEI LI et al.   Oncology Letters

Alkaline Phosphatase ALPPL-2 Is a Novel Pancreatic Carcinoma-Associated Protein

(2013) P. Dua et al.   CANCER RESEARCH

Robotik

(2013) C.T. Germer et al.   CHIRURG

PTRAJ and CPPTRAJ: Software for Processing and Analysis of Molecular Dynamics Trajectory Data

(2013) Daniel R. Roe et al.   Journal of Chemical Theory and Computation

MMPBSA.py: An Efficient Program for End-State Free Energy Calculations

(2012) Bill R. Miller et al.   Journal of Chemical Theory and Computation

Down-Regulation of FXYD3 Is Induced by Transforming Growth Factor-β Signaling via ZEB1/δEF1 in Human Mammary Epithelial Cells

(2011) Hiroto Yamamoto et al.   BIOLOGICAL & PHARMACEUTICAL BULLETIN

OPM database and PPM web server: resources for positioning of proteins in membranes

(2011) Mikhail A. Lomize et al.   NUCLEIC ACIDS RESEARCH

PHENIX: a comprehensive Python-based system for macromolecular structure solution

(2010) Paul D. Adams et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Gene expression signatures differentiate ovarian/peritoneal serous carcinoma from breast carcinoma in effusions

(2010) Ben Davidson et al.   JOURNAL OF CELLULAR AND MOLECULAR MEDICINE

NUPACK: Analysis and design of nucleic acid systems

(2010) Joseph N. Zadeh et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

3D-DART: a DNA structure modelling server

(2009) M. van Dijk et al.   NUCLEIC ACIDS RESEARCH

Proteomic Analysis of Ovarian Cancer Cells Reveals Dynamic Processes of Protein Secretion and Shedding of Extra-Cellular Domains

(2008) Vitor M. Faça et al.   PLoS One