Motif conservation, stability, and host gene expression are the main drivers of snoRNA expression across vertebrates

SnoRNA copy regulation affects family size, genomic location and family abundance levels

(2021) Danny Bergeron et al.   BMC GENOMICS

Retention of duplicated genes in evolution

(2021) Elena Kuzmin et al.   TRENDS IN GENETICS

Dual-initiation promoters with intertwined canonical and TCT/TOP transcription start sites diversify transcript processing

(2020) Chirag Nepal et al.   Nature Communications

Small nucleolar RNAs: continuing identification of novel members and increasing diversity of their molecular mechanisms of action

(2020) Danny Bergeron et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

A large-scale binding and functional map of human RNA-binding proteins

(2020) Eric L. Van Nostrand et al.   NATURE

H/ACA snoRNA levels are regulated during stem cell differentiation

(2020) Kathleen L McCann et al.   NUCLEIC ACIDS RESEARCH

The Bgee suite: integrated curated expression atlas and comparative transcriptomics in animals

(2020) Frederic B Bastian et al.   NUCLEIC ACIDS RESEARCH

snoDB: an interactive database of human snoRNA sequences, abundance and interactions

(2019) Philia Bouchard-Bourelle et al.   NUCLEIC ACIDS RESEARCH

Logomaker: beautiful sequence logos in Python

(2019) Ammar Tareen et al.   BIOINFORMATICS

Functional diversity of small nucleolar RNAs

(2019) Tomaž Bratkovič et al.   NUCLEIC ACIDS RESEARCH

Points of Significance: Statistics versus machine learning

(2018) Danilo Bzdok et al.   NATURE METHODS

Simultaneous sequencing of coding and noncoding RNA reveals a human transcriptome dominated by a small number of highly expressed noncoding genes

(2018) Vincent Boivin et al.   RNA

Box C/D snoRNP Autoregulation by a cis-Acting snoRNA in the NOP56 Pre-mRNA

(2018) Søren Lykke-Andersen et al.   MOLECULAR CELL

Small Nucleolar RNAs Tell a Different Tale

(2018) Joanna Kufel et al.   TRENDS IN GENETICS

Corrigendum: Human nonsense-mediated RNA decay initiates widely by endonucleolysis and targets snoRNA host genes

(2016) Søren Lykke-Andersen et al.   GENES & DEVELOPMENT

Assembly and trafficking of box C/D and H/ACA snoRNPs

(2016) Séverine Massenet et al.   RNA Biology

RNA-seq of human reference RNA samples using a thermostable group II intron reverse transcriptase

(2016) Ryan M. Nottingham et al.   RNA

High-throughput sequencing of human plasma RNA by using thermostable group II intron reverse transcriptases

(2015) Yidan Qin et al.   RNA

The emerging landscape of small nucleolar RNAs in cell biology

(2015) Fabien Dupuis-Sandoval et al.   Wiley Interdisciplinary Reviews-RNA

Splicing noncoding RNAs from the inside out

(2015) Li Yang   Wiley Interdisciplinary Reviews-RNA

Identification of discrete classes of small nucleolar RNA featuring different ends and RNA binding protein dependency

(2014) Gabrielle Deschamps-Francoeur et al.   NUCLEIC ACIDS RESEARCH

The Genotype-Tissue Expression (GTEx) project

(2013) John Lonsdale et al.   NATURE GENETICS

Insights into snoRNA biogenesis and processing from PAR-CLIP of snoRNA core proteins and small RNA sequencing

(2013) Shivendra Kishore et al.   GENOME BIOLOGY

Snakemake--a scalable bioinformatics workflow engine

(2012) J. Koster et al.   BIOINFORMATICS

The Evolution of Intron Size in Amniotes: A Role for Powered Flight?

(2012) Qu Zhang et al.   Genome Biology and Evolution

A map of the cis-regulatory sequences in the mouse genome

(2012) Yin Shen et al.   NATURE

ViennaRNA Package 2.0

(2011) Ronny Lorenz et al.   Algorithms for Molecular Biology

Integrative genomics viewer

(2011) James T Robinson et al.   NATURE BIOTECHNOLOGY

Systematic identification and evolutionary features of rhesus monkey small nucleolar RNAs

(2010) Yong Zhang et al.   BMC GENOMICS

NWChem: A comprehensive and scalable open-source solution for large scale molecular simulations

(2010) M. Valiev et al.   COMPUTER PHYSICS COMMUNICATIONS

Eukaryotic snoRNAs: A paradigm for gene expression flexibility

(2009) Giorgio Dieci et al.   GENOMICS

Retroposed SNOfall--A mammalian-wide comparison of platypus snoRNAs

(2008) J. Schmitz et al.   GENOME RESEARCH

Longer First Introns Are a General Property of Eukaryotic Gene Structure

(2008) Keith R. Bradnam et al.   PLoS One