Chronic exposure to ampicillin alters lung microbial composition in laboratory rat

Microbiome differential abundance methods produce different results across 38 datasets

(2022) Jacob T. Nearing et al.   Nature Communications

Effects of Antibiotic Use on Saliva Antibody Content and Oral Microbiota in Sprague Dawley Rats

(2022) Xi Cheng et al.   Frontiers in Cellular and Infection Microbiology

The Effects of Immunosuppression on the Lung Microbiome and Metabolites in Rats

(2022) Huiwei Dong et al.   Frontiers in Microbiology

Whole lung tissue is the preferred sampling method for amplicon-based characterization of murine lung microbiota

(2021) Jennifer M. Baker et al.   Microbiome

Exposure to a mixture of cigarette smoke carcinogens disturbs gut microbiota and influences metabolic homeostasis in A/J mice

(2021) Zhuo Qu et al.   CHEMICO-BIOLOGICAL INTERACTIONS

Profiles of antibiotic resistance genes in an inland salt-lake Ebinur Lake, Xinjiang, China: The relationship with antibiotics, environmental factors, and microbial communities

(2021) Yongqiang Wang et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

Altered gut microbiome composition in patients with Vogt-Koyanagi-Harada disease

(2020) Zi Ye et al.   Gut Microbes

Neonatal dysbiosis has long‐lasting detrimental effects on the microbiota‐gut‐brain axis

(2020) Ciara E. Keogh et al.   FASEB JOURNAL

PICRUSt2 for prediction of metagenome functions

(2020) Gavin M. Douglas et al.   NATURE BIOTECHNOLOGY

Oral microbiome: possible harbinger for children’s health

(2020) Jin Xiao et al.   International Journal of Oral Science

The Gut Microbiome Regulates Psychological-Stress-Induced Inflammation

(2020) Chunliang Xu et al.   IMMUNITY

Effects of Antibiotics on the Bacterial Community, Metabolic Functions and Antibiotic Resistance Genes in Mariculture Sediments during Enrichment Culturing

(2020) Meng-Qi Ye et al.   Journal of Marine Science and Engineering

Fine Particulate Matter Exposure Alters Pulmonary Microbiota Composition and Aggravates Pneumococcus-Induced Lung Pathogenesis

(2020) Yu-Wen Chen et al.   Frontiers in Cell and Developmental Biology

Comparative Efficacy of Long‐term Antibiotic Treatments in the Primary Prophylaxis of Spontaneous Bacterial Peritonitis

(2019) Antonio Facciorusso et al.   LIVER INTERNATIONAL

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

(2019) Evan Bolyen et al.   NATURE BIOTECHNOLOGY

Effect of Intratracheal Instillation of ZnO Nanoparticles on Acute Lung Inflammation Induced by Lipopolysaccharides in Mice

(2019) Ping Wang et al.   TOXICOLOGICAL SCIENCES

The influence of antibiotics and dietary components on gut microbiota

(2018) Ruth K. Dudek-Wicher et al.   Przeglad Gastroenterologiczny

Taxonomy annotation and guide tree errors in 16S rRNA databases

(2018) Robert Edgar   PeerJ

The Lung Microbiome and Its Role in Pneumonia

(2018) Benjamin G. Wu et al.   CLINICS IN CHEST MEDICINE

Effect of gastric fluid aspiration on the lung microbiota of laboratory rats

(2018) Sade M. B. Finn et al.   EXPERIMENTAL LUNG RESEARCH

Deciphering of microbial community and antibiotic resistance genes in activated sludge reactors under high selective pressure of different antibiotics

(2018) Renxin Zhao et al.   WATER RESEARCH

Three distinct pneumotypes characterize the microbiome of the lung in BALB/cJ mice

(2017) Julia Scheiermann et al.   PLoS One

Dissemination of antibiotic resistance genes from antibiotic producers to pathogens

(2017) Xinglin Jiang et al.   Nature Communications

The Microbiome and the Respiratory Tract

(2016) Robert P. Dickson et al.   Annual Review of Physiology

Alterations of lung microbiota in a mouse model of LPS-induced lung injury

(2015) Valeriy Poroyko et al.   AMERICAN JOURNAL OF PHYSIOLOGY-LUNG CELLULAR AND MOLECULAR PHYSIOLOGY

Streptococcus salivarius 24SMB administered by nasal spray for the prevention of acute otitis media in otitis-prone children

(2015) P. Marchisio et al.   EUROPEAN JOURNAL OF CLINICAL MICROBIOLOGY & INFECTIOUS DISEASES

Global burden of COPD

(2015) José Luis López-Campos et al.   RESPIROLOGY

Reagent and laboratory contamination can critically impact sequence-based microbiome analyses

(2014) Susannah J Salter et al.   BMC BIOLOGY

Gut microbiome composition and function in experimental colitis during active disease and treatment-induced remission

(2014) Michelle G Rooks et al.   ISME Journal

Towards an ecology of the lung: new conceptual models of pulmonary microbiology and pneumonia pathogenesis

(2014) Robert P Dickson et al.   Lancet Respiratory Medicine

Mice Anesthesia, Analgesia, and Care, Part I: Anesthetic Considerations in Preclinical Research

(2013) S. Gargiulo et al.   ILAR JOURNAL

Compartmentalized and systemic control of tissue immunity by commensals

(2013) Yasmine Belkaid et al.   NATURE IMMUNOLOGY

Clinical experimentation with aerosol antibiotics: current and future methods of administration

(2013) Paul Zarogoulidis et al.   Drug Design Development and Therapy

Lung-enriched Organisms and Aberrant Bacterial and Fungal Respiratory Microbiota after Lung Transplant

(2012) Emily S. Charlson et al.   AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE

Early life antibiotic-driven changes in microbiota enhance susceptibility to allergic asthma

(2012) Shannon L Russell et al.   EMBO REPORTS

Longitudinal analysis of the lung microbiome in lung transplantation

(2012) Klaudyna Borewicz et al.   FEMS MICROBIOLOGY LETTERS

Global and regional mortality from 235 causes of death for 20 age groups in 1990 and 2010: a systematic analysis for the Global Burden of Disease Study 2010

(2012) Rafael Lozano et al.   LANCET

Microbiota, Disease, and Back to Health: A Metastable Journey

(2012) R. Blumberg et al.   Science Translational Medicine

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

Characterization of Central Carbon Metabolism ofStreptococcus pneumoniaeby Isotopologue Profiling

(2011) Tobias Härtel et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Analysis of the Lung Microbiome in the “Healthy” Smoker and in COPD

(2011) John R. Erb-Downward et al.   PLoS One

Metagenomic biomarker discovery and explanation

(2011) Nicola Segata et al.   GENOME BIOLOGY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Partitioning core and satellite taxa from within cystic fibrosis lung bacterial communities

(2010) Christopher J van der Gast et al.   ISME Journal

Airway microbiota and bronchial hyperresponsiveness in patients with suboptimally controlled asthma

(2010) Yvonne J. Huang et al.   JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY

A Persistent and Diverse Airway Microbiota Present during Chronic Obstructive Pulmonary Disease Exacerbations

(2010) Yvonne J. Huang et al.   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY

Disordered Microbial Communities in Asthmatic Airways

(2010) Markus Hilty et al.   PLoS One

Aerosol Antibiotics in Cystic Fibrosis

(2009) David E Geller   Respiratory Care