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Clearance of bile and trypsin in rat lungs following aspiration of human gastric fluid

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(2016) Benjamin J Callahan et al.   NATURE METHODS

Enrichment of the lung microbiome with gut bacteria in sepsis and the acute respiratory distress syndrome

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Alterations of lung microbiota in a mouse model of LPS-induced lung injury

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The Infant Nasopharyngeal Microbiome Impacts Severity of Lower Respiratory Infection and Risk of Asthma Development

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(2015) Keith C Meyer   Expert Review of Respiratory Medicine

The Role of Bacteria in the Pathogenesis and Progression of Idiopathic Pulmonary Fibrosis

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Characterization of Romboutsia ilealis gen. nov., sp. nov., isolated from the gastro-intestinal tract of a rat, and proposal for the reclassification of five closely related members of the genus Clostridium into the genera Romboutsia gen. nov., Intestinibacter gen. nov., Terrisporobacter gen. nov. and Asaccharospora gen. nov.

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Changes in the Lung Microbiome following Lung Transplantation Include the Emergence of Two Distinct Pseudomonas Species with Distinct Clinical Associations

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Environmentally Determined Differences in the Murine Lung Microbiota and Their Relation to Alveolar Architecture

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The Effects of Airway Microbiome on Corticosteroid Responsiveness in Asthma

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Comparison of the Respiratory Microbiome in Healthy Nonsmokers and Smokers

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The murine lung microbiome in relation to the intestinal and vaginal bacterial communities

(2013) Kenneth Barfod et al.   BMC MICROBIOLOGY

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In the Face of Chronic Aspiration, Prolonged Ischemic Time Exacerbates Obliterative Bronchiolitis in Rat Pulmonary Allografts

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Human gut microbiome viewed across age and geography

(2012) Tanya Yatsunenko et al.   NATURE

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

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Fundoplication After Lung Transplantation Prevents the Allograft Dysfunction Associated With Reflux

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Metagenomic biomarker discovery and explanation

(2011) Nicola Segata et al.   GENOME BIOLOGY

phangorn: phylogenetic analysis in R

(2010) Klaus Peter Schliep   BIOINFORMATICS

Draft Genome Sequence of Turicibacter sanguinis PC909, Isolated from Human Feces

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QIIME allows analysis of high-throughput community sequencing data

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The influence of gastroesophageal reflux in the lung: A case-control study

(2010) Kornelija MISE et al.   RESPIROLOGY

Direct sequencing of the human microbiome readily reveals community differences

(2010) Justin Kuczynski et al.   GENOME BIOLOGY